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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10004695 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19891 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (40.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009382 | Metagenome / Metatranscriptome | 318 | Y |
| F046855 | Metagenome / Metatranscriptome | 150 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000469511 | F009382 | AGG | MAEFNQSGFSSGRMPHSPNLYPNPPFGTEYKAAQKAYIPPVKDIYPARDNRYPAYAGPLQDARLVTDYRPQCTKNIRPDAQYNTKLWLIHHGEEIIDESRKRQVEWTGASLTMANTIPPPAGIVHSNPFYSELNPTGFKNGIGVERADVDCPGLFGTFTYDPTMAEIRSNRKNIGLTSYYEGGRNSQRGKFPTK |
| Ga0214921_100046956 | F046855 | N/A | MSLPAAMSAQGLTAMAPINPIDAFLQIFNSNPYFIGIMMLILNLGGRFISLEVTKKQEQFLQLPWVRRGLIFTVLFVATRNIWVAFWATLTVILFLGYLFNENSALCIFGQGGKVGSKCDGGQDGLKPGEEMTPEEKEILQRLSAKAQRYQTVGNANTGTTITKNPEQLALDKSLKQPDADKEDDVLHTDIYAANLTLLRNPL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |