Scaffold Ga0214921_10004555

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10004555
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20306
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (83.72%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F014827	Metagenome / Metatranscriptome	259	Y
F019450	Metagenome / Metatranscriptome	229	Y
F020665	Metagenome / Metatranscriptome	222	Y
F027439	Metagenome	194	N
F037193	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000455510	F014827	N/A	VLRAILEIIAAVFRIIPGWKEKRTQNLENDWRKNREAIDRDLPGESWWLRNNDTSNKHNGSS
Ga0214921_1000455518	F019450	GAGG	MTTYAVYNSIGQFQARFLTWRSALRWAIREGMEWSAVIRKEVGE
Ga0214921_1000455530	F037193	AGGAG	MKSKDELAMQVKKEWDKQNLRWKLWLEAGGFTTEIFCYSSAEEEYFKCVRELVDHAYQMQSV
Ga0214921_1000455531	F002826	AGG	MRVESKDRLKWSRNMLLIARDKLAIERDRVSHGHAIDLIQIITMVDAAALIAKEILEDEKQG
Ga0214921_1000455532	F004010	AGGAG	MPLGKNVSKNMSELAADNRKKGSERGAGGKPRSRKQMIAIALSAAGKSKPRKFRMRSGS
Ga0214921_1000455533	F027439	GAG	VKSIYKYARLEVNALAEMLDKNACQPGRLLESNASPLAWIMNQMLYDKFHGHGWVLGLLAGSFVKQKENKQCH
Ga0214921_1000455536	F020665	AGGA	MRKRKGKSIKLVKTEEYKAVKIFVDVDDDLYEALAEAGKQHILKDKMACFEYALNKALLELCEEVR
Ga0214921_1000455539	F003304	AGG	MKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLAGQIKEDEAKLVGLGR
Ga0214921_100045557	F001459	GGA	MRKLKAILAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGQKLSLILLNLTLRQNASAVMKKPEELADACGRAKGFRGCVATLESLASQKLNSAIPGYGDGSDEPVAD