NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004473

Scaffold Ga0214921_10004473


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004473 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20540
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (82.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F037732Metagenome / Metatranscriptome167Y
F101146Metagenome / Metatranscriptome102N
F104716Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000447317F101146AGGAMTYTIISNREVCGKTTGDTLTAEELQDAGVSAETLIAGNHIKASNTAPQIPSITIKIEEGATK
Ga0214921_1000447320F004344AGGGGGMDGLNIKVKTTDGVEKTFSLRPRIIVDFEQKYGKGLTKLIGEEQKLEHIYYLGWLALRANGVVVKPFGPEFLDTLEGVQLDTDPNSESTETA
Ga0214921_100044734F104716GGAMDCTICGKKAERPGACNRCAAKVRNQIAELPQLHKEAGQFLHPSRTGSGTASTERSIGINVAALDFTMATELLRTLHAWESTIRFDRKLTRPAMIMKEPTTESEVLASATFHLTHLDWSLGQEWAADFAHEIQMIHAKGRAAAKRFSEQPRRIPCPTDDCKKYVVIDADNLTAEVSCFGCKQQWTVLRLIALAMSNPSKTFYLDVEAIAMWLGITEREVYRTIKKNDIQRRGSLYDIAAIIQARS
Ga0214921_100044735F037732GGAMLNITISIGDVHTDMTTDNNLSFDAIESLLNRAVSATLQSYLSLPEKDRLALYGSEFEDEHDGDDD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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