NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004287

Scaffold Ga0214921_10004287


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004287 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21081
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012753Metagenome / Metatranscriptome277Y
F024038Metagenome207Y
F034484Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100042872F034484N/AMVTLIINILLIAVLVGVGVYFMFFTPKYTRLTEKTEGFFGGVARGSGHPDCLRTLPEGSEILDMILKRVNVNGGDPEDAPTTKGADYREFQLILSKLGCLKKDLMSPSGIVEATRYQAFETAHDRINVAEVCAMCISKNISSRDLDIIFATWRDRGKVLLRRLCTEANLNKEELAKAEALFNKSWNDVYDIAKSKCLKTDFSKQNGGSTAGGDVSGFEPENLKDLRDYTNKYGGMSASGWNSNV
Ga0214921_100042875F012753N/AMAAMVDSKSTHVKTQESQENKVMDGSETLTTPQDNEIVTLTHSIIEWRRLKEENDSYRQQLKERSKKMKVLEEVILRVMKSNNIGALDLKSSGGRVLYKKQKRQAGLGQKNMMVLMAAALQSEAKATEVMKYIQEHREVVTKESIAYEKSE
Ga0214921_100042876F024038N/AMDSPLDNIARNILYEMWFSVAESIFKQVCEVTELNQEQIDALKSVALRPNDFQIEIE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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