Scaffold Ga0214921_10004113

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10004113
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21735
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (72.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010540	Metagenome / Metatranscriptome	302	Y
F028512	Metagenome / Metatranscriptome	191	Y
F036230	Metagenome / Metatranscriptome	170	Y
F095137	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000411341	F036230	GGA	MIEVGDIVQVDPSKEVFGGCMVVVTEVKSWGIQGYVQSAGVEGQQYIRLSFEDFESTGGKAIWSVA
Ga0214921_1000411346	F028512	N/A	MNEALKAIAIEAGAPEEVINTLWFNIFCQKFAYLVVEELEKEIV
Ga0214921_1000411347	F010540	GAGG	MNKIRAIVNGVSFYTTRSAIRQRRVGDFSMQNDALSYCLHCMGSSDGFATTVRYYDHKMVQHKYDVQLSVVHRG
Ga0214921_1000411350	F095137	N/A	STIAMPTKRTRIYPEKNCPTCGIKFAKQGKYCSRACGNSRVFTATYKAKVSNALKQKMIDDPEYKEKQIAKIIPDIPIPPMTESPMGLNQFISDGDLWTEAD