NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004020

Scaffold Ga0214921_10004020


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004020 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22042
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018681Metagenome / Metatranscriptome233Y
F028428Metagenome / Metatranscriptome191N
F031789Metagenome181N
F037549Metagenome / Metatranscriptome167N
F089785Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000402013F028428GAGGMSYGKSEYPVTPGKATLFSKDPSQKKNPNQPDWDGDLVLTRSYTEGQTLKLSIWKSMAKNGKEYFTIKENTYFKDKELADNAPKEVPAQYKPYGGTFKKSSIDDDSDVPFN
Ga0214921_1000402022F031789GAGGMAYNQAFYPMGRTFVLSGTTTNQSANIYADSPCSQYLFVNHEVASTGQPVYVRISSTSGNNAAVANATSGNYGVPIRPAESIVLSGPQCSPTANVYITYITATGTANVYVTPGEGV
Ga0214921_100040203F089785GAGMQPTVDQLLDLLLDGDPVAWEISRTPDGLRIVGVMANGETRVLATVPIAAPDSDQDPCR
Ga0214921_1000402030F018681AGGAMDPQLQQAQAVTQQFMQQHGIDARTMMALGEMAQEAIQDQSLYAMLREQLIDAGIFTEKDLPEKTNYTILSALAGMGKFAGEM
Ga0214921_100040207F037549GGAMNDYQLMQVWRGIKFPQKEVEQRVLEFGRQVMHESSDHYYQLGRQEAFQAMKPVLLKALSALDSAHYILMIQPVTPREEALAVDDAIKHLNSILEVL
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