NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10003743

Scaffold Ga0214921_10003743


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10003743 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22995
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (70.59%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F004475Metagenome / Metatranscriptome436Y
F006885Metagenome / Metatranscriptome362Y
F007115Metagenome / Metatranscriptome357Y
F018929Metagenome / Metatranscriptome232Y
F032149Metagenome180Y
F045545Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000374311F006885N/AMEYLLVVGLTFVVSWSIIKISNKKRGRFLSKIRYRQSNIYEMVKDVIPKEMFDKPKVITQSQKHVQKNMLKVVITEGKAYWILNNVFYTANAINGRVDESTVEPLDIQNLSKKDLSKMLSILDDLRKGMESNDSGSAGNSGI
Ga0214921_1000374319F003688GGAMYTDNMRKAFHSINAPKNFSVEVIDNEYFLTIKLDEKKFLYMGHDDKISALQYVVKLKKALEDCGAVILVTREAIK
Ga0214921_1000374321F045545AGGAGMIKLLICKIKKHNLFDAGSCPFTGKTYMGCLRCGGTIEK
Ga0214921_1000374322F032149GGAGGMKKKITILILAIISSIIAFSLFFASRMSRLSELDLFNIEEDDF
Ga0214921_1000374336F004475GAGGMTNWTEELTEKQKEQVWDFIVFTVKEIRDQIAVDIEGTSKLWKAKGLNKSRRTQKAFEISAAIARGQNEVQLEKS
Ga0214921_1000374348F018929N/AMNIEEMVLKIEIADLLNKESYRVWDSAKVVKNQDYHDGLVKGLKMASIFVSKL
Ga0214921_1000374351F007115GGAGMRRITLGISKEEKVAVSIGRLLSDFSLDLEAIGKYLATTQPYVIYARALEVLEATEYNKEVSEYREIGKYYAERLF

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