Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10003743 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22995 |
Total Scaffold Genes | 51 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (70.59%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003688 | Metagenome / Metatranscriptome | 473 | Y |
F004475 | Metagenome / Metatranscriptome | 436 | Y |
F006885 | Metagenome / Metatranscriptome | 362 | Y |
F007115 | Metagenome / Metatranscriptome | 357 | Y |
F018929 | Metagenome / Metatranscriptome | 232 | Y |
F032149 | Metagenome | 180 | Y |
F045545 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000374311 | F006885 | N/A | MEYLLVVGLTFVVSWSIIKISNKKRGRFLSKIRYRQSNIYEMVKDVIPKEMFDKPKVITQSQKHVQKNMLKVVITEGKAYWILNNVFYTANAINGRVDESTVEPLDIQNLSKKDLSKMLSILDDLRKGMESNDSGSAGNSGI |
Ga0214921_1000374319 | F003688 | GGA | MYTDNMRKAFHSINAPKNFSVEVIDNEYFLTIKLDEKKFLYMGHDDKISALQYVVKLKKALEDCGAVILVTREAIK |
Ga0214921_1000374321 | F045545 | AGGAG | MIKLLICKIKKHNLFDAGSCPFTGKTYMGCLRCGGTIEK |
Ga0214921_1000374322 | F032149 | GGAGG | MKKKITILILAIISSIIAFSLFFASRMSRLSELDLFNIEEDDF |
Ga0214921_1000374336 | F004475 | GAGG | MTNWTEELTEKQKEQVWDFIVFTVKEIRDQIAVDIEGTSKLWKAKGLNKSRRTQKAFEISAAIARGQNEVQLEKS |
Ga0214921_1000374348 | F018929 | N/A | MNIEEMVLKIEIADLLNKESYRVWDSAKVVKNQDYHDGLVKGLKMASIFVSKL |
Ga0214921_1000374351 | F007115 | GGAG | MRRITLGISKEEKVAVSIGRLLSDFSLDLEAIGKYLATTQPYVIYARALEVLEATEYNKEVSEYREIGKYYAERLF |
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