Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10003743 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10003743 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22995
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (70.59%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22995

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (70.59%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F004475	Metagenome / Metatranscriptome	436	Y
F006885	Metagenome / Metatranscriptome	362	Y
F007115	Metagenome / Metatranscriptome	357	Y
F018929	Metagenome / Metatranscriptome	232	Y
F032149	Metagenome	180	Y
F045545	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000374311	F006885	N/A	MEYLLVVGLTFVVSWSIIKISNKKRGRFLSKIRYRQSNIYEMVKDVIPKEMFDKPKVITQSQKHVQKNMLKVVITEGKAYWILNNVFYTANAINGRVDESTVEPLDIQNLSKKDLSKMLSILDDLRKGMESNDSGSAGNSGI
Ga0214921_1000374319	F003688	GGA	MYTDNMRKAFHSINAPKNFSVEVIDNEYFLTIKLDEKKFLYMGHDDKISALQYVVKLKKALEDCGAVILVTREAIK
Ga0214921_1000374321	F045545	AGGAG	MIKLLICKIKKHNLFDAGSCPFTGKTYMGCLRCGGTIEK
Ga0214921_1000374322	F032149	GGAGG	MKKKITILILAIISSIIAFSLFFASRMSRLSELDLFNIEEDDF
Ga0214921_1000374336	F004475	GAGG	MTNWTEELTEKQKEQVWDFIVFTVKEIRDQIAVDIEGTSKLWKAKGLNKSRRTQKAFEISAAIARGQNEVQLEKS
Ga0214921_1000374348	F018929	N/A	MNIEEMVLKIEIADLLNKESYRVWDSAKVVKNQDYHDGLVKGLKMASIFVSKL
Ga0214921_1000374351	F007115	GGAG	MRRITLGISKEEKVAVSIGRLLSDFSLDLEAIGKYLATTQPYVIYARALEVLEATEYNKEVSEYREIGKYYAERLF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10003743

Overview

Ecosystem & Geography

Associated Families

Sequences