Scaffold Ga0214921_10003492

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10003492
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23946
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (72.34%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F011487	Metagenome / Metatranscriptome	290	Y
F024314	Metagenome / Metatranscriptome	206	Y
F062758	Metagenome	130	Y
F084234	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000349225	F084234	N/A	MYPVLLMLGRQRLLLLDFITTPFEWFANVVQYSLIFMAIMMLVLTIGAVVAIPLGLKLLGVAFAKTIVVETSKVLKDIGITNIDLKQSKETQKMKAYLDRKVVPILSKSS
Ga0214921_1000349227	F024314	N/A	MNNDEYQLTPEQAKQVLLFQIEQKLRFAIADQIEKKFHGTYHGASHDIAKFIRNS
Ga0214921_1000349237	F062758	AGG	MADILLSNDDLTVFGGPETISLDLDIGPQGDRGSIIVGSNGNPQDANVNAAIVQSLQALDVAIDYNPASTTYKTVFQRVATATGTQWTQMFNLKTDYYSSIKDATAVNGTLAITPINVADIYGSSGVTAATSDAFNIQYSISSSDAAGPLATTLLVKPLITSQGFLALPLEIKGVEYIDDAWQPMAGPKRVHLFITVV
Ga0214921_100034927	F000684	AGG	MTLGGYQYQIGDLFTTSKTGITGRIASFEPMSNKLTRVSLVLANGSRRLAMVKTSK
Ga0214921_100034929	F011487	AGGAG	MTYENDELYDEYYSTVCPTCKENSVDEYEDKCTHCLLEEMSITYNEDIALEMSLGLDY