Scaffold Ga0214921_10003263

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10003263
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25055
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (63.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F006885	Metagenome / Metatranscriptome	362	Y
F018928	Metagenome / Metatranscriptome	232	Y
F028423	Metagenome / Metatranscriptome	191	Y
F044481	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000326310	F000264	AGAAG	MRMTMIFLRQKLTNNTMAAKLYTSEAWLRKRFVMDKKSPQDIAKECGTSVETIYVYLAKFGFRKSKR
Ga0214921_1000326319	F044481	AGGA	MGKRRTQAELDGLLKFILGLTLGSILFFTTMGILYALVFVEQPLTGQSENDKMFFNVLGSVATFITGTLAGILIGQSGAKDIMDAQLSNKEMDSKNTLADKKLESEIDEAKARRLNKPDGAMPEEQPVDANWDK
Ga0214921_1000326339	F028423	AGG	MQNLEKNELIQLVGFYKQKLSDVELESLKLQLEVNKLNSMVLNLSQGPVKKTK
Ga0214921_1000326340	F006885	N/A	MEYLLVIGLTLLSYWSIIKISNKRRMIFLNKNKYRQSSIYEIVKDVVPKQRFDKPKVITQSQRHIQKNMLRVVIAEGSAYWILNNVFYTANAINGRVDEETIKPLDIENMPTKELDKMLSILDDLKQGAEPNDSGSTRNKGI
Ga0214921_1000326342	F018928	AGGAG	MIIRSLNTMEKIINKNKNLLWLGWDVVDLKESDTAKTSPMGIRVKDKWYLHRIYKPGRNGWDIPNKYKD