Scaffold Ga0214921_10002891

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002891
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27104
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (89.74%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001531	Metagenome / Metatranscriptome	676	Y
F003862	Metagenome / Metatranscriptome	464	Y
F008808	Metagenome	327	Y
F026858	Metagenome / Metatranscriptome	196	Y
F041080	Metagenome / Metatranscriptome	160	Y
F091587	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000289118	F091587	AGG	MTYSPYGAKGSIVVTPRKVHASDRRLGTIGARLTDTGHGKAVRLKRTRPRHAVTTNRPKVERVLPILSDQEQERLARILALSERERDFRASMPSIHLEPTK
Ga0214921_1000289120	F026858	AGG	MTHDNLLLDLTNREVEVIRMALRVQEDTHKRNDFSHLLVEVQDLRSKIADAIIDNARELTKA
Ga0214921_1000289123	F041080	GAGG	MSSQTILGLAEELRIIADEISYHSFDTTSEYPKRGTIVKATADNGRFKDNSLWVSLGDGTYQHLTGSKGLVTTHERLNGYTSVVFQA
Ga0214921_1000289132	F001531	AGGA	MDWSRIEKWDYVATAVASEYRRKFDMVEYDDIKQSLYEWFTQHPNKLDEWEKIGEKDAKNLIYRSLRNQALDYCQRWKAKSIGYDVSDLYYYEADIVEALLPPVLRNEWGVSHKLNLGIPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEIANFLSLGSDDTARMRGNRAVKRLVVKLGGYRPYNDIDFTPSTETEESQDSQETE
Ga0214921_1000289135	F008808	GGA	MTQYDSKCPECGEEFDNVFEATDHLLEEDEEFDPALILPNGYRLMVGSLLRCLYGHANNPALIKDVVQSTYATLFSAETKPDVLGSVIEDIIVGSSMNGLDDELKKLLEDGK
Ga0214921_100028916	F003862	AGGAG	MATYTLVTPTLEQGHIGGHRLFTHFKQRTKSYTIILSSGVYSLIQYPTEDELATYTAYYMGGCQHTGISDAIRMAMIADGIVTSANFTTE