NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002891

Scaffold Ga0214921_10002891


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002891 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27104
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (89.74%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F003862Metagenome / Metatranscriptome464Y
F008808Metagenome327Y
F026858Metagenome / Metatranscriptome196Y
F041080Metagenome / Metatranscriptome160Y
F091587Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000289118F091587AGGMTYSPYGAKGSIVVTPRKVHASDRRLGTIGARLTDTGHGKAVRLKRTRPRHAVTTNRPKVERVLPILSDQEQERLARILALSERERDFRASMPSIHLEPTK
Ga0214921_1000289120F026858AGGMTHDNLLLDLTNREVEVIRMALRVQEDTHKRNDFSHLLVEVQDLRSKIADAIIDNARELTKA
Ga0214921_1000289123F041080GAGGMSSQTILGLAEELRIIADEISYHSFDTTSEYPKRGTIVKATADNGRFKDNSLWVSLGDGTYQHLTGSKGLVTTHERLNGYTSVVFQA
Ga0214921_1000289132F001531AGGAMDWSRIEKWDYVATAVASEYRRKFDMVEYDDIKQSLYEWFTQHPNKLDEWEKIGEKDAKNLIYRSLRNQALDYCQRWKAKSIGYDVSDLYYYEADIVEALLPPVLRNEWGVSHKLNLGIPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEIANFLSLGSDDTARMRGNRAVKRLVVKLGGYRPYNDIDFTPSTETEESQDSQETE
Ga0214921_1000289135F008808GGAMTQYDSKCPECGEEFDNVFEATDHLLEEDEEFDPALILPNGYRLMVGSLLRCLYGHANNPALIKDVVQSTYATLFSAETKPDVLGSVIEDIIVGSSMNGLDDELKKLLEDGK
Ga0214921_100028916F003862AGGAGMATYTLVTPTLEQGHIGGHRLFTHFKQRTKSYTIILSSGVYSLIQYPTEDELATYTAYYMGGCQHTGISDAIRMAMIADGIVTSANFTTE

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