Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10002891 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27104 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (89.74%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001531 | Metagenome / Metatranscriptome | 676 | Y |
F003862 | Metagenome / Metatranscriptome | 464 | Y |
F008808 | Metagenome | 327 | Y |
F026858 | Metagenome / Metatranscriptome | 196 | Y |
F041080 | Metagenome / Metatranscriptome | 160 | Y |
F091587 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000289118 | F091587 | AGG | MTYSPYGAKGSIVVTPRKVHASDRRLGTIGARLTDTGHGKAVRLKRTRPRHAVTTNRPKVERVLPILSDQEQERLARILALSERERDFRASMPSIHLEPTK |
Ga0214921_1000289120 | F026858 | AGG | MTHDNLLLDLTNREVEVIRMALRVQEDTHKRNDFSHLLVEVQDLRSKIADAIIDNARELTKA |
Ga0214921_1000289123 | F041080 | GAGG | MSSQTILGLAEELRIIADEISYHSFDTTSEYPKRGTIVKATADNGRFKDNSLWVSLGDGTYQHLTGSKGLVTTHERLNGYTSVVFQA |
Ga0214921_1000289132 | F001531 | AGGA | MDWSRIEKWDYVATAVASEYRRKFDMVEYDDIKQSLYEWFTQHPNKLDEWEKIGEKDAKNLIYRSLRNQALDYCQRWKAKSIGYDVSDLYYYEADIVEALLPPVLRNEWGVSHKLNLGIPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEIANFLSLGSDDTARMRGNRAVKRLVVKLGGYRPYNDIDFTPSTETEESQDSQETE |
Ga0214921_1000289135 | F008808 | GGA | MTQYDSKCPECGEEFDNVFEATDHLLEEDEEFDPALILPNGYRLMVGSLLRCLYGHANNPALIKDVVQSTYATLFSAETKPDVLGSVIEDIIVGSSMNGLDDELKKLLEDGK |
Ga0214921_100028916 | F003862 | AGGAG | MATYTLVTPTLEQGHIGGHRLFTHFKQRTKSYTIILSSGVYSLIQYPTEDELATYTAYYMGGCQHTGISDAIRMAMIADGIVTSANFTTE |
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