NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002881

Scaffold Ga0214921_10002881


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002881 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27192
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (55.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F008938Metagenome325Y
F019102Metagenome231Y
F019290Metagenome230Y
F023059Metagenome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000288114F019102N/AMSMTLDEELNSSFVSPEREFMGEKLAPYTEGSRLLLLQVRDDEDSSIYFIWAFVYMHIQLAKDRKEAIKLAWNKNLFREKLFLWADNKTQEDRERATTLASSIIEEASKGQVEIVPTAGASEQLGNA
Ga0214921_1000288115F019290N/AMSEAFWGTTNIKVASAVATYGAKPRAIDPVTYQIFEDGRRQVTFWFESNGAGDKARAEMERSWADMQSDIESPIRYIRAALENRETLLGLVKRAEPIRVIKRGNQTLFVAENAKPELKKAILKHL
Ga0214921_1000288121F005584N/AMSGTIDTTYLSTDLTYMIGDLWASVTGLGSSAVSASVTDLGTAQELDIGGDIIKVTQSLVVKSSSISAPSIGQLCSVSGIERMIAAFSRATDDVSYTIELADITT
Ga0214921_1000288139F008938N/AMIRQADLVKKWGMDRGQISKMVKDGMPLTSEADAYRWKLANQKRPSRIQPILPPSTNSSETLENADSESLKSENSLGRLIRAKRAELVAYSLVARASRDGNPVAMRAAIAGWGEAKKRASEAEMEHAQFEEATRSVIRMDEVREVFGKWLGSIRNLMDAMPASLSARANPSDPECAKQAIQEGVDQIFVTIQKAEGAFK
Ga0214921_100028816F023059GGAMITSILAIIAGLVGIGGWWIANRAKTRRERDDEQIAYRRSLRDAEVDSWIHRR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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