Scaffold Ga0214921_10002867

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002867
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27287
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (92.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000766	Metagenome / Metatranscriptome	899	Y
F001094	Metagenome / Metatranscriptome	780	Y
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F050167	Metagenome / Metatranscriptome	145	N
F052382	Metagenome	142	N
F057118	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100028671	F000766	N/A	AYKFVLNRDATTTSQGPIFKGYQAKATIATPRQRIMKFPVYCFDIETDRYNVISGYEGKALQRLQSLENVEEGGDVVTWQDLTTGESRQVVIEQISFTRMTPPDKRFDGFGGVIEITIRT
Ga0214921_1000286712	F052382	GGA	MSSYGKRKGATFETSVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGVANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWTKRAGK
Ga0214921_1000286715	F008808	GAGG	MDRSIPPCPECGERFANVFEATDHLLEDDDEFDPALVLPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETQPEAIKDIVEEMIIESQMMEIDNELKQLLEEGK
Ga0214921_1000286718	F001531	AGAAGG	LDWDSIEKWDYIVTAVASEYHRKFPMVELEDIRQSLYQWFTEHPNKLKDWEAIGEKDAKNLIYRSLRNDALDYCQRWKAKSVGYDVTDIHYYESEIVEALLPPVLRGEYGVTHKLNLGRPGRPSAPAEGGNLTIMMLEVDSGYWKLNKDDRRIIFLRFAEHLDFGEIANYLELGTDSAARMRLKRAISRLINKIGGYKPYNDIDTVSSEDQEPEE
Ga0214921_1000286723	F057118	GAGG	VEAKQYRVKVNAVRATLVYYISEYDIEAAINQAIEAPFKEWEVYDFDMPLGTDVEAEEI
Ga0214921_1000286725	F050167	GGA	MKGNTMTTTTIQVEDYLASISLTLADLADELATVQFDVNSVNGYEPKGTILKALPTQSRFKPKSMWVSLGNGKYQHLTGEKGLIAKHSRLEGYTSVVFRP
Ga0214921_100028674	F001094	AGG	MNTTKLKAIVSTYLRAAVAAVLALYLTGTTDLKALALAGVAAVAGPILKAIDPSATEFGIGSK