NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002827

Scaffold Ga0214921_10002827


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002827 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27469
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (74.00%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Associated Families18

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F005702Metagenome392Y
F005846Metagenome388Y
F006138Metagenome / Metatranscriptome380Y
F008741Metagenome328Y
F009142Metagenome322Y
F010463Metagenome303N
F011284Metagenome292N
F012113Metagenome / Metatranscriptome283Y
F012433Metagenome / Metatranscriptome280N
F014488Metagenome262Y
F019290Metagenome230Y
F023059Metagenome211Y
F023833Metagenome208Y
F024265Metagenome206N
F033350Metagenome177N
F074559Metagenome119N
F090073Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000282710F010463AGGCGGVNDLVLAATIHRVKLCEDRIAQFEQMVSTLTAQMAQNRTELASKGLATLVMGTTTPLDIPKELVPTYGKYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSSGRGIK
Ga0214921_1000282714F033350AGGAGGMSAVDVEVPQTKWSMLVWKTIKEKPHNDERVLMDIGGEVVVGRFVDDSFVSRSWGHSENDVRLWASWPKAPKW
Ga0214921_1000282715F023833AGGAMKSHSELIQDILNDVRSKAADIERERCADLVQQLADGTEDAVITGILNEVVLAIRRLGDVSR
Ga0214921_1000282719F005702AGGAVIFGLVVFIGLFILQGLRLLGKHIDQQNYERRKFYLFVAGELDKMDKIVAEGNQPKEPKEPELLLPTKNWVGRN
Ga0214921_1000282720F005846N/AMTSFPLPARPVGSAVPALHDEFAEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKAGKGTIVVMDAFDPANPKPYSERMKEIEHLEAVTFDLQPNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALNDGKYPYITNPNYCSPSWQKHRIRW
Ga0214921_1000282722F074559N/AMKAQNPWQKLLSEHIKDKFAPPQPAGYYTREQVSKLWQKSMNTTSRMLNQMLEQKKVEMKRHPFIVARKDHRVIRNLKTFKILPTKPPHK
Ga0214921_1000282724F011284AGCAGMTSEQGVEKTTEEVFTKKHDLHLTTLQMAAVESMERKYKKGVVEHGGTKLWEMPTARLVENAIEEATDQLTYLLTLRQQMHIVMELARDGCTDETLTNPRARECCHLIYTTLTGQSKPL
Ga0214921_1000282726F023059AGGAMWEAILASLAGLIGIIAWWTKNRAKTRKERDDEEIAYNRRLRDSEVDSWIHRN
Ga0214921_1000282727F012113N/AMNQILAFVQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSRK
Ga0214921_1000282737F090073GAGGMSDILNEELNATFVRPGRDFKGQPLAEYTEGSRLLMIQAKEKEDSPVYFVWAFLYLHILLAKNRKEAIKLAWDKEAFKESLFDWVSDKTQEDRDTATNIVSSIIEEASKARVSIISSSGEGFSMGNE
Ga0214921_1000282738F019290N/AMQGTSYWGTTNIKIASCVAAFGGTLRQSDPVTHIVKEDGSRQVTFWFNSGEGTEAKAEMERNWGDMKSDSESPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPINAKPELKKAILRAI
Ga0214921_1000282739F006138GAGGMPATTVGQAGLVFGLTAETIGLVQSFSETRNIEKNEVRNASGDVTGIGYYNPTTAYSLSVAITGANTSLTVGGAFSTLANATTVGNVRIDSLTINKSNSAFVTLDISATGYPNVS
Ga0214921_1000282740F012433GAGGMSADQVAELQERLSVVREAIARIEERQQSIISVIERHTSELAQWTAKINGKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR
Ga0214921_1000282744F009142N/AMNNSVQINVEDAIAGLLASISGLNIYKTNRIGTKLFPSATISASVGGQLLGNYTGVYEVAVTIEYSDTAAKISQEAFDSEYCSIFEAFYSETTPLFTKIQNNIIDTKVYTARITGQTPTIKTAKRAWQRGLKINLICTPSELDDGLRYLDFHEKRNSMYVGVI
Ga0214921_1000282747F008741GAGGVAKTIKYSQRLGDVLRCLPACKYLADQGHEVFFDCFPQYHSVFDLVSYVKAGSKGDVLDLEIWPKKYEAYRKSKRSWTDFVYSHPEIMDADKTNIILDKLDDKPAVGLPETYNLVAAFGNSQGFYRNPLELITKARNDLGKDNFYVMTPPEIRIQGLSTYTAPSVSEMAKAIRGAKDFWAINSTPIVLASVVRRSKPTAFFPQKNEWETDNIFDFDGMFRMD
Ga0214921_1000282749F003049N/AMKNAKQIIGCRKSKKGEDTKGLGLIKFGKSRPCKTKYVKVDITYDDKAKKELFEAGMLALQHDPEAVIEYVIKKALCELVKK
Ga0214921_100028275F014488GGAMNHIGQDPADSILASYTPDMAEHIDTLQDRVKERLAKIQAMNPSIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDESLLALATNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREQCPKWNKEAWSKGIKRGKK
Ga0214921_100028277F024265AGTAGMNEPFTSSEAKAKGILSDRYSGKEMSKLYADNRNQATIDMLRDAVFTLITNKIPTCTIAQVLRKTHGAIQYHLRCLEGDGKLKRRNKRCHWREAVEA
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