Scaffold Ga0214921_10002725

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002725
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28159
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (32.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017470	Metagenome	240	Y
F027440	Metagenome / Metatranscriptome	194	N
F037195	Metagenome	168	N
F043895	Metagenome	155	Y
F044452	Metagenome	154	N
F059910	Metagenome / Metatranscriptome	133	N
F093769	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000272510	F059910	N/A	MKKGTEVKIGFIPANVYKVLVHRTETRQSGKGFKMVVCECEIVAPETAIANGTTYKTLGSKGNMYIMLENKNGVDSALELLAAPLQVVGLYDNLPEDYSDVDVAEVLSTLQGHAFNMLVQSQPEYVSDDPSNSRDIKFAKRDENGEAIIKRYNTQFDFSQVKGVASLLSAF
Ga0214921_1000272514	F093769	N/A	MSNQSLNELDLLLGLPKPVEEMTDKELERFLLQHFPHTRPTGTDLASLLNDPLLKGIDVQAIINQTQNFKFKK
Ga0214921_1000272515	F043895	N/A	MKSLMLAITILATETTLIALHQDFDAKLRAISQIESNDNDKAKGRHGELSRYQIKRAVWRQHFPDEKDMRHVPAEARRCAKAHLCWLELKLCLAQGTKHPNPRDVYAAWNIGLTAYARRDYTLAKLPSTIRQRADRFTNLYEDYRNHQ
Ga0214921_1000272517	F037195	N/A	MNIFTPTNPPPQHDPVDLMKQADHLLNKTERKQGWPYYDLKHAIQFAQMVVKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFLVDKGAGILRGQIHEDDIPLVSELSEKVQISVRKVNLIIELVEPVDNILDAMTPLMGGSDEDPFTFNEEIFREEIISFVNSGEIGSQASWQNYTSSAEKFARQLAMQDNTIIIETTPTELIAMKMSEEMLKGLE
Ga0214921_1000272530	F027440	N/A	MSSTKNLELVASFAGSVFTSDNDGNPVFVTAERHVRKTAKSAERIVSFQKPVLAVSHLEYYIKRGEALVEIPTEHITKTKNDDGSVTETKRVSNALTDLVEEHLNDIAEDASEAYLSKGNTPDYFAAHIYGVSADRETEKSVLKKIDSIRSEIGSIVFSMAGEWSDDVARSLGVSDKEAAIAKQSNLIGSLAQLLAKANELNAAKAKRESKKAKV
Ga0214921_1000272532	F044452	GAG	MTNRCLRCLCLIDPERKSLGFSRCIKCAPQWSYKGALNFGHKTGGSIQPMHPDVFKVHKRVTARSAKGTNGRAFQTGTCVITIKDA
Ga0214921_1000272537	F017470	GAG	MMRNQIVGLRRAGMTCEEISVALEIDPVVVRIALEATGGSAVLRKEALKEDDITDDVSESEAKEMMGIIKNIARDEDSGVYARLNAAKYAHGAKRGYHKRHLDLNVGSGELLLKINEAYMSASMRARAALSGQSLTAKELTVIEAPTTVEAFVKETIKETPANQSPI