Scaffold Ga0214921_10002659

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002659
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28645
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (63.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009885	Metagenome / Metatranscriptome	311	Y
F010302	Metagenome / Metatranscriptome	305	N
F017131	Metagenome	242	Y
F024955	Metagenome	203	Y
F030063	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000265918	F030063	AGG	MPTSFNYDGKPGYIYNAADDTWYELSGKTDTSGTFEWAGPHTNLSTVTIIDHLIGKKGINNYLNPTARDASITSPVAGSICVIRQDGSGNTINQLQYYSGSAWVAFIPSQTDNASKFLQTDGIITSWQTLPDPYVVNFMLMGG
Ga0214921_1000265919	F024955	GAGG	MAVEDIGSLVPTKIPALIDDANIQDALRAYHYGSYDFDTAETDTAELLNPSIAYTINDLQEQIDDQVALELAARNISSAQNSAPVAANFTAFSATIPNGYIWVDKDAAAPVGYLSATSIYTTTQPSTGLANGVIWIKKGSVPLEMYVYNADTSTFNQVI
Ga0214921_1000265920	F010302	AGCAG	MVDVLLNTEDVVVLGPPETIDVLVDIGPQGTRGTKFIVGSGEPNSQTSSGVLLGQTLILNDMYINVSPGENYGYLYQYVSQPGGNTWIEVLHMNPAIYSAVEVIPFTSGNGSITIPISNIVSVTGSPLTASNFNIQYQIEGANPIASSLEVPALVGAGTNLVINLHGSQYSGSSWSALTGNKTVHIFISIV
Ga0214921_1000265921	F017131	AGGAGG	MAFPGSYNFNYYRGDTAEFVIRPKTANGSAFDLTGFTADFFIANTRGPAPTQSYEAQAVVDGSADTVTCTILPGVGRDLAAGTYVYDVQIDNGPTEIYTILTGTITVTNDITGADES
Ga0214921_1000265928	F009885	N/A	MTASEWAGFVLTLLSIGAIVLSGIRWYVKVQIKPIREAVEDIRSETKTNGGTSMRDEIRAIKKEQEDAKQLRKATSDKLDHMYEVLLDYVARSK