NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002591

Scaffold Ga0214921_10002591


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002591 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29145
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (89.13%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y
F026858Metagenome / Metatranscriptome196Y
F041080Metagenome / Metatranscriptome160Y
F091587Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000259118F041080GAGGMSTTAILNLAEELRVIADEISYNAIDTSTDYPKRGTIVKALASQTRFKPKSMWVSLGNGTYKHLTGSKGLVTTHDRLDGYTEVVFEG
Ga0214921_1000259121F026858AGGMTHDNLLLDLTPREVEVIRMALRVQEDTHKRNDFPSLVLEVQTLRSKIADAIIDNAKELTKA
Ga0214921_1000259123F091587GAGGLTYNPYGGSGSIVVTPPSVRASDRRLGTNGARLSDTKHGKAVRLTRTRQRHAVTTNRPKVERVLPTLSEQEQERLARELALAEREREFRATLPSVHIDAND
Ga0214921_100025916F008808GGAMKNKINPCPECGQHFDNVFEATDHLLEDDEEFDPALVLPNGYRLMIGSLLRCMYRYANNPEQIQSITQDTYMTLFSAETDPGTVLEVIEDMIVDSSMVGIDDELKQLLEDGE
Ga0214921_100025918F001515N/AMTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGITEAAYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNLSKGFLITVDDLMSATRLYKKAKADELATN
Ga0214921_100025919F001531AGAAGGMNWQQIEPWEYVITAVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVAEWEKIGNKDAKNLIYRSLRNHALDYCQRWKAKSVGYDVSDIYYYEADVVEALLPAVLRAEYGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAVKRLVNKLGGFKPYLDYDAPEPEGEEPSEIVQGYSTANQGDGNDDWKEID

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