Scaffold Ga0214921_10002463

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002463
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30014
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (67.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011221	Metagenome / Metatranscriptome	293	Y
F034459	Metagenome	174	N
F067420	Metagenome / Metatranscriptome	125	N
F088289	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000246327	F088289	GAGG	MIKVVKLITGEELIADVTSGDVTMTLSKPCSLQMVPSRKNPDQPMMGMFPYAAYTEDHCIDIDIDKIIWDAKPIKELYNQYNSAFGSGIQLTGL
Ga0214921_1000246328	F067420	GAG	MNILSLLPVRKNDWYIQASVFDDQIIVFFYNPLTLAYFFKIFYNEDLAYIFIEELTND
Ga0214921_1000246330	F011221	AGGAG	MFYANMAIDSIQDAKITFLKQTVQEDSLKKPLVDFVEAQRVFTKQIAKSASDVITLTAQTFANTITGITKKGA
Ga0214921_1000246341	F034459	AGG	MNIALIFAGISFGHKSERDFNHCFPNIDRNLIQPLWEEHSVYKYVATYDNDRMDEVTRLLNPKRLASIPFEGSKQNPTRAAAVKLTGDDERIDFYIMSRFDVHYNKPLKDFNIDWDKFNFVSREGNGYWESQQFVGDTFYAWPKRLHKQVVEGFAELAKFDPNHMHNFYSILAPIMGAENIHFMSEEPQLSGHLLTSICTRDYTDRLRGKIPINEEILARFP