Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10002449 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10002449 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30127
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (37.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

30127

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (37.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F037078	Metagenome / Metatranscriptome	168	N
F056412	Metagenome / Metatranscriptome	137	N
F080893	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100024491	F056412	N/A	MNKKLTKYEILIANLEKASADLKKASEESQKRLNESFAKYQEKVSVAHHNSMIINEKQIEEII
Ga0214921_1000244912	F080893	N/A	MNKTIKITQRNIFEGEMANPQNCAIARAIKRDMKGKLMSVSVLPSHVTLKIDNKMFFAKMPKIGASFIKRFDHRKSTNPFQLNLKFKKGYALV
Ga0214921_1000244928	F009669	N/A	MKTMLSKIFGPNWRSSTSGVTTVIAITTAIAIHSDPSLVAFLPDVAEVYIIGISKLVAVVSGIVFALTVKDAAVTGGTVASTVEAEERINPHGDNI
Ga0214921_1000244929	F014229	GGAG	MNKLQLAAVALLSVFLGGCATTQTGKIDAPASVENALPYIKPAVILACTVVLDQATSGNDRIEKAKMINHVAIIVESLTLGSAPTPDQLQKALTDYLPIEKTHWVNYVSAIKDMYTVQFSRVDGNGALAIKVLNAIASGCKDATSSYVE
Ga0214921_1000244931	F010817	AGGA	LKKLASILALNFLFIGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDSGIKPYKDNFANELYLIDSEHLVYFGVLNSWLKEKVAQDNIIDKTIDKINN
Ga0214921_100024495	F037078	AGGA	MKNQLNITKQSFGDTTAFLLEGGKGRITSFHNALYNWGATNGQLHDMGNGKAFYFYAQPEAVLHALVKIALHSLCNKINAKGMKGGLMSLAKIKAQGQFDNIIDGRFLRASASNDTYGFGTITAEKPSDYCGAVSSGRE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10002449

Overview

Ecosystem & Geography

Associated Families

Sequences