Scaffold Ga0214921_10002367

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002367
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30841
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (68.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003080	Metagenome / Metatranscriptome	508	Y
F003268	Metagenome / Metatranscriptome	496	Y
F026214	Metagenome / Metatranscriptome	198	Y
F035640	Metagenome	171	Y
F071233	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100023672	F035640	GGAG	MHYVCIENNLVISILSYQPNVPSSVLVLEITDAQAAQIAAQTHYFDVASKSVAAVAAGVTAQRATDIANGQEREFLNSTDWKVLRHIRQKALNIATSLSDAEYLQLEQQREDAAARIQ
Ga0214921_1000236725	F003268	AGG	MSQNNLPDTLPTIQKLIQRTQVAERSQQKEIRISLQEARDLTTELALMTSKLGQTISEIHQMLAAIKESTTQIDVKFDGGQF
Ga0214921_1000236738	F003080	AGGAG	MNTAKDLTDNLIYRAKNLQEFVVERDWGLIPAGVVKFNIQHTVGQPARIFVHAMTQEEAERQVDDWFGEGVE
Ga0214921_1000236742	F026214	AGGA	MKNYKDYRYFENRPDVVKVWEDLEAYHDWCRIQLCDFNPADLYRRDSQNYGSYLASKRPRRPYQGNRPNFQKRG
Ga0214921_1000236744	F071233	GGA	MNPQIQEILNKSTDDILGVPVVNQELFARLLIEECAKICFELRFTTEGPAEGASYQRILCGTAIKENFGLQGKGPITAKNIK