Scaffold Ga0214921_10002360

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002360
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30892
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (82.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005563	Metagenome / Metatranscriptome	396	Y
F008244	Metagenome / Metatranscriptome	336	Y
F016150	Metagenome / Metatranscriptome	249	Y
F019833	Metagenome	227	Y
F029752	Metagenome	187	Y
F035769	Metagenome / Metatranscriptome	171	Y
F037225	Metagenome	168	Y
F099305	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000236022	F019833	AGG	MYELRYLVRNGWDGPEKVLQYRTQIEVTEYSTKTDEGKYISVKKWTDWRDVPTVKDI
Ga0214921_1000236035	F005563	GAGG	MVHGNQIWFAWRLCMIDYHEAIKEMHKGNVVKYVGTVNGNVMTDRGWSWCMCRGCVFPYNGEPLWNMGGRMVYDPDFRYVLTGETVDPRAWRPEENRDRKDIKSKLGYSRIGLGNI
Ga0214921_1000236044	F029752	AGGAG	MERDYKNLQYILNKNPHELFEWWNSLDDEDQAYALEIITEYRKILEEPLVEDLSIARDLLKQFML
Ga0214921_1000236049	F099305	N/A	MIHIKRFIDKVSIMETKQGKDVVIPIGEARGLRDELSKLLVDNYELLQNKIAIEPVFQVEINGGKF
Ga0214921_1000236052	F016150	AGG	MTEEKKSKNPFINMANAAKQNNKHPGLAKAPKSQGPKPTKGNGGATVVRRSGRGG
Ga0214921_1000236055	F008244	AGGAG	MFNTATYAFIDGVSDFKKQFVEQTVQHEGIKNALNGFIDAQSKYTKQAADAGMQSMMSLGMIFTSKDFYTQLADQYKAMVPAFNIAKSAKSTKAK
Ga0214921_1000236056	F035769	AGG	MKKILGMLIVFLGFSTDTYGTELEKYIVGRNPQDIGDIERLTYEFHRKQSDWRYL
Ga0214921_1000236065	F037225	AGGAG	MNKDIEKLFKQANGYVEVDEKGNRSTYTYDFDPDQFASLIIQNCIQTLVNHGYTDAATVLEKEYAEDWKKLEFPEI