NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002254

Scaffold Ga0214921_10002254


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002254 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31588
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (84.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F025013Metagenome / Metatranscriptome203Y
F054668Metagenome / Metatranscriptome139Y
F101146Metagenome / Metatranscriptome102N
F104716Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000225433F054668AGGAGMGISTRQVTVTTAATALVDATAEAEMVYLHSVSGTCFLGNSDVTTSTGYRMDNGDKIAIENKANGIWAITTSGTVTMNVMAIEK
Ga0214921_1000225434F025013GGAGMNNVSFIKLSFIDGVEVEHAIIDRGNGEFTSMLKSTYDEMIANEAATL
Ga0214921_100022544F104716GGAMDCTICAKKTERAGACNRCATKVRNQIAELPQLHKEAKQFLQPSRTGSGAASTERSIGINVAALDFTMATELLRTLHAWESTIRYARGLTPPAMINKEPTIEGEVLASATFHLAHINWSLEQEWAADFAHEIQIIHAKGRAAAKRFSEQPRRIPCPSDECSKYVVIDADNLTAEVACFGCKQQWTVLRLIALAMSNPSKTFYLDVEAIAMWLGITEREVYRTIKKNDIQRRGSLYDIAAIIKARS
Ga0214921_1000225440F004344AGGGGGMDGLNIKVKTTDGVEKTFSLRPRIIVDFEQKYGKGLAKLIGEEQKLEHIYYLGWLALKSNGVVVKPFGPEFLDMLEGVQLDTDPNSESTEIA
Ga0214921_1000225443F101146AGGAMTYTVISNREVCGKIKGDVITAKELQDAEVSAEALIAGNHIKASNTAPQSPSITIKAEEGATK
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