Scaffold Ga0214921_10002215

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002215
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31913
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (77.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004092	Metagenome / Metatranscriptome	453	Y
F004405	Metagenome / Metatranscriptome	439	Y
F017265	Metagenome / Metatranscriptome	241	N
F022813	Metagenome	212	N
F082150	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000221511	F082150	GGAGG	MGALDWANYERQKNNTVNKDINAAKTAEAISIVGAEQVAARGGVNSQGYFNDVPEYQQLTANERASVTLSNGSINTQGMLAILDKKEREYFGDIKYNRMYGIHPTNNEPVTFLKATPPAPEPEMFSARMFETSPLVKAAPIDTILFDDAAVPIEIMSDLIFENIGGQELISIVRSDTVNGQKISYQPIKNLSAIQQQYNPNNILGLQQTANRFFAGFSIKLEDKIPEVGNGLNGENVYFDETTGDLIIEFVNLNNDEQIETQITVNGTIYEANLGDYTSX
Ga0214921_100022152	F004405	GGAG	MTVCEITDFMYPMKADIYFPILAQGDYGQPKKDWVYDRTIICNATPVGGAGTEDIKPEAFLQYENKLIARTSNDPRLSSNGSYNAITNILITNIRTANDLVIYKETAGARSGRGTIYEIATVEPFTGPFGNIEYYKMLWRRTENQTVGD
Ga0214921_1000221524	F004092	N/A	MLDKKFSVYPGKFPCKTCQEEVTSLRYWIESGDATWMCSKKHISKVGLLPQKKKKKDFID
Ga0214921_100022153	F017265	AGG	MIVTMNSKSFEMQMNNIVNYSFGFLEGVQKGKKIFLDKLGKGVIQALAQYVDVEARSNPKALHHVYEWNQTGSPTSRLFDLNYTVSNLGLSINSTFRQSRSVSENMTVPFYNKAKIMENGIPVTISPTRSQVLKFSGPNGDVFTKKPIKVDSPGGDAVFGSFESTVDIFISRYFKQSFLKASGLYEYIKKPTLYKKNLKSGSRMGRSKGIETGFKWIANATIGVE
Ga0214921_100022154	F022813	GGAG	MTILTDTGFPPTFLNGYILSELAHYNLIAEADLLNPSPMVPAQFPTNIEDLYNDNIVIRQTESPLLVVYDRLMRFRPTPFYARKREQLIYFLYSTDVGKLIDSVRVISNALDREDSSAQDINSWAIANPVLNSQGDTIPYNIFFHNTRVYQADESRDVAELASARTLFVNKIIVEYDYHIKTEADSRYT