Scaffold Ga0214921_10002171

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002171
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32302
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (77.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F008305	Metagenome / Metatranscriptome	335	Y
F018929	Metagenome / Metatranscriptome	232	Y
F040623	Metagenome / Metatranscriptome	161	Y
F042331	Metagenome / Metatranscriptome	158	Y
F052590	Metagenome / Metatranscriptome	142	Y
F060903	Metagenome / Metatranscriptome	132	Y
F063707	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100021712	F008305	GGGGG	MLGYTYKDIQAFGNSLTWAIDTAKSQGNEQQWKELLIVWDFFEGLLAEGYLTNES
Ga0214921_1000217120	F018929	GGA	MENKEIADLLDKESYRIWDTTKVIKNQDYHDGLVKGLKMASKLVAKL
Ga0214921_1000217128	F060903	GGA	MSNFDDLTDDQKSQVMNLVILTVKEIREQIANDIEYTYEVWATHGKAKSRRTKKAFEVCADIARGLNEIVEK
Ga0214921_100021713	F040623	AGAAGG	MKVRIAIEQIIDLDDAMSNDIGFELYGPEDMSNNDKVDYLVTRFAEDIDSLVKYDEVRDQILVEYIED
Ga0214921_1000217144	F042331	AGGAGG	MNEQIKAVLASYGRSVLGAATAMYASGVTDPETLAYSLIGALVPVVLRAVNPNDKAFGRMPAESDIEAALKNAKVVKKKAAKKPAAKK
Ga0214921_1000217150	F003688	GAG	MYTDAMRRAFHSVIPPKGFGVNIIDNEHFLTIKLDEKHFSGLVHDDKIQALQYVVKLKNALEMEGAIVLVTREALPK
Ga0214921_1000217153	F052590	AGGGGG	MIVTNLEKMEKIVKANTNLSWVGWDVVDLKRSDSARTAVNGVRVKGLWYMQRVYKVTRNGWDIPNRYRG
Ga0214921_100021717	F063707	AGGAG	MPKCLDCDNTTRFWYQEMGNKLGIYNEDGTLDDVEDDYYDEVEGGTCAECDSTNIEGKL