Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10002019 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10002019 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33789
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (71.70%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

33789

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (71.70%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F026867	Metagenome	196	Y
F031026	Metagenome	183	N
F033352	Metagenome / Metatranscriptome	177	N
F043823	Metagenome	155	N
F048158	Metagenome / Metatranscriptome	148	N
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000201935	F006891	N/A	MSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELIKRRISL
Ga0214921_1000201937	F031026	GAG	MLGGRIALLLISALALCSCATTQTQDGPPPSPDSISYFIYAWDKAERTNPPCPQAYRDLFAESLKALSDSLAETQRERARQ
Ga0214921_1000201941	F048834	AGGAGG	VALPTVKDWAVALDAYVAGDREEVVPPGWFTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIKIKICNRGSKVGHCRRVPHYRLTPVKAGKN
Ga0214921_1000201942	F043823	N/A	MKKAKTNLTIDPKVKRNGERLAQKSGLSLSAYITTLLVKELDKQKKR
Ga0214921_1000201944	F026867	GAG	MSSVRLNDSAMNLRKQDRALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDQWRLMQTGLNLPRPADRLRSAVGKARELASRSDSRVSWQRIASTLKDEAWLHELHAGSESSD
Ga0214921_1000201950	F033352	AGGCGG	MTDLTKFRLIENIEVMACRNSAERVVKALNRGEVEQAKDLARKHEIAWHITDREFQNLNEPHRNNDFCDDE
Ga0214921_100020197	F048158	N/A	MGRPVNHDVKRAMAATGKSRATVYLQRKKVEAQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADKVLAARDNALVPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10002019

Overview

Ecosystem & Geography

Associated Families

Sequences