Scaffold Ga0214921_10001943

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001943
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34582
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (78.95%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F016662	Metagenome / Metatranscriptome	245	Y
F032097	Metagenome	181	Y
F043404	Metagenome	156	Y
F051925	Metagenome	143	Y
F082675	Metagenome / Metatranscriptome	113	N
F093864	Metagenome / Metatranscriptome	106	Y
F098314	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000194328	F051925	GAG	MGRGFQFDFFAEEWSHTCGACSKELYAPTKKHMEGNFWLHTHSNDCLGGW
Ga0214921_1000194333	F032097	AGGAGG	MEFNLHHDVDKGPLVRWVANQAMNISGWLAKVSSPYADMYTAVWDDYEDDELSVPHNQMGIFEDLEPFPQFEKLTEDLI
Ga0214921_1000194353	F098314	GGAGG	MKKWIVDKFREMLNQTFTLLGMFIAWVVLTGSAKTVVGWAILWSIVVWLVSMNLREQKEKEGGE
Ga0214921_1000194366	F007525	GGAG	MTNLTGVTVTYTEVIPTSKQMAEFYVWQEGYESYATITYLDRVVEIERNGEMHLTLPYFVNGELCDEGATHVRYSDDLEAAGINDDIQLMQFLKTISNSGFEIYRMNPWWEVFAHNQDMGEIYETLYEAVDGGIDYILDDRNW
Ga0214921_1000194368	F082675	AGGA	MSKQYHWVVVYDEHWGAFMVDAESEFDRDKIMYDKETGRWEWLDPESEEETEYYRLEEILAYNLTRLDLTAERV
Ga0214921_1000194370	F093864	GGAG	MYNYNVEFVLEAMVMITHVSFDEPDLSDEFIIEQARQNILSYYKIDPEVLYLQDVILHRG
Ga0214921_1000194372	F016662	GGAG	MTYLVAVTEVVYDEEYLIKEMLATGEYGINAHPISHEAMVEFVKDREWQIEHNLFLTRYDVPVSIAIKDEDGTDLFFAKNKIEVK
Ga0214921_1000194373	F043404	AGGA	MIDTDDKILQTLADDFVELHNVGGIELEQWETAYKFVKHFYHTEEMVQIIIREKR