NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001832

Scaffold Ga0214921_10001832


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001832 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35599
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (63.79%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F005702Metagenome392Y
F005846Metagenome388Y
F007164Metagenome / Metatranscriptome356Y
F008741Metagenome328Y
F009142Metagenome322Y
F010463Metagenome303N
F011284Metagenome292N
F012113Metagenome / Metatranscriptome283Y
F012433Metagenome / Metatranscriptome280N
F023585Metagenome209Y
F025225Metagenome202Y
F025739Metagenome / Metatranscriptome200Y
F027777Metagenome / Metatranscriptome193N
F030060Metagenome186N
F082353Metagenome113N
F090073Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000183210F010463N/AVNELVLAATIHRVKMCEDRIREFEQMVTTLTAQMAHNRAELASKGLANLVMGTTTPLDIPKDLVPTYGKYRARGNRTHSVVMKRWEIWKAQHESGLSLRDIARAWGCHPTSVLNAKNRNFKARKATGRNTK
Ga0214921_1000183212F023585AGGAMSVKRLKLLDEFHAIASKRLKELFRDFDHAKRENYKDIISHLDYSHRITKELLERAKKYQKIDMEKAKK
Ga0214921_1000183216F027777AGGAMSEELPTFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDQRNDFRCLNLPTTAKENAEGFGIFDYGQDKQ
Ga0214921_1000183218F005702GGAMIFGLLVFIGLVILQGVRLFAKHIDQQNYERRRFYLSVAADLDRLDKMIAEGNQPKKPELVLPTKNWVGRN
Ga0214921_1000183219F005846GAGMTSFPLPARPVASAVPASHKEFAKRTSIEGKLNGWCGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVHCEIMGQRTKTGRGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKAMDDGKYPYITNPNYCSPAWQKQRIRS
Ga0214921_1000183223F011284AGCAGMTSTQGVEKASKLFTNKHELHLTTLQVAAVESIEKKYKKGVEENQGTKLWEMPTARLVEEAIAEATDQIVYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQTKPPL
Ga0214921_1000183225F025739GGALGLWLGGQRTEPRQKKNETMKKSLTTAVSVIRKSILGFTAASLICGCATTRPYDIGQVPNQDSITDFIMRWDKLDRTKATPEEYRQLYGQSLKTISRLVEENERLRKRLDQ
Ga0214921_1000183226F012113N/AMNQILTFVQSQDVFAWVGALVALLTAVIAVASLIPGDEPENTLQKVVDFLSKFSRK
Ga0214921_100018323F007164AGAAGGMSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDLLLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPTQWTQAQRIQFVEEARPIVDAFVEAGGKI
Ga0214921_1000183232F025225N/AMADVINSKLGDVAVTAIGTTYHTTAAQIASELQRVEGQVVTKKVFKPFGLTKSGKIKKRKIGEYAVGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKLGIGGLGMGTKPGTIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRGNLTRGDYSLEAIKRLGGGTKADSQKAQIEGIIFNRAGDLDTRYYPVRKRAVSGAVKVGIPGLQMAIDKVMKDMNVYLARKNKEESDKLGL
Ga0214921_1000183234F090073AGGMSDILDEELSASFVQPHKSFKGEQIAEYTEGSRLLMLQCKDKNDSSVYFVWAFLYLHLLIHKNKREAIKLAWDKDAFRERVLDWVVDKTDEDREIATNIVSTIIEEAGKARVAVVRSGFEGQASGNE
Ga0214921_1000183237F012433GAGMSADQIGELRERLARIEERQTNIIAILERHTSELAQWANKINTKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVLPR
Ga0214921_1000183239F009142N/AMTNGVLINVEDAVASLLSGISGLNVYKTNKVGAKLFPFATISASISGQVLGNYTGVYEVDVSINYSDTAAKTSQANFDSKYCSIFEAFYSETPPLFTKIQNNITDTKVYTARIVGQSSTIKTAKRAWQRGLKMSLVCTPQ
Ga0214921_1000183241F005584AGGMAGTISTSYFATDLTYMIQDLYQSVTGLGSSSVSASVTDLVTASDLEIGGEVFRVTQSIVVLASSISAPTIGSLCTVSGVERMVGGFSQSTDGLSYTIELAEITT
Ga0214921_1000183242F008741GAGMSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLAQYHSVFKLTSYVKAGNRKGDIIDLEVWPNKYEAYRKSKRSWTDFVYSHPEIKDADKINIVLDRLDEKPAEGLPETYNLVAPFGLSQGYYRNPLELIVRAREAMGKDNFYVLCPEDIKIQGLNTYTASSVEQMAKAIRGANDFWAINSTPIILASVTRRDKRTGFFPQKNEWETDNIFAFEGLVSMD
Ga0214921_1000183244F030060N/AMIKGIITSESPEIHWHHLNVAGGRVLDLGCAFWTEAERQEANGTTKYFLSQKPEFYMGVDINQGDITTLSRQYPQGKFICEKADSCSQIDSWIKEHSITHIKCDIEGEETQFLRLDNVHNLKEIAIELHYSDTWLKEFMAWFDSIGFECYRHDSISFCSEISVIYGRLKC
Ga0214921_1000183258F082353N/ALKDSDAESYKSKTSLGRLNRAKQAEVVAYSLVATAANNQNPVAMRAAVQGWGEAKKRVAEAEMEHARFEEVTRVLVRMDEVREVFGKWLGAIRNLMDAMPSSLAARANPSDPECAKRAIQEGIDQIFVTIQKAEGAFK
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