Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10001678 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10001678 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37248
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (73.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

37248

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (73.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008490	Metagenome / Metatranscriptome	332	Y
F016642	Metagenome	245	N
F016784	Metagenome / Metatranscriptome	244	Y
F020863	Metagenome	221	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y
F060700	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000167814	F060700	N/A	MRTLRELAKEAGIDEKYFNRDFLMLDQRYAIMQDDKGLHLTDIMSWASFSPRTIGRKSNATAKGLQFQLGQYKVWIKQLEGVK
Ga0214921_1000167817	F020863	AGGA	MNTTIEEVRNLVATLEKLVQPLFEGEEMTDAPYESMKRPHLVLQEGSKTYGRAYRVFFTGGSKYGSGHCEPRGFSDYLGGTKAEAAHSLRKIIAGIHTGLMIAEKKEAKA
Ga0214921_1000167820	F026864	AGGAGG	MSEQDKMAQFVFTVVIAPANKQYEIELWDFAGTEPKQLATGGGSNWRTALGQALSKIELPTDKEEVADV
Ga0214921_1000167825	F055450	GGAGG	MEASNKRLVGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLSGNTVPVVGVRIQTAEGRGAPATKGNSNRDTNESNNGGEA
Ga0214921_1000167830	F016642	GAGG	MIVHLSKDEVRVCTMLATERWLAKYGSVDRPNYADGKKNGYLEHELLANVRANVSEWAVASLTDSSWNIPWYPNDLHPRRAKLPDVGVNFEVRTVRTRDSIPFWSKDNGKIIVGTKIIDEDYYSQVEVYGWCNPKQYAIAQYRDETIGGWRVPVTELKEFK
Ga0214921_1000167837	F016784	GGAG	MEFNTYDYVKPEFKEIIATGEYAAHYWFEQGWKACRLAFLLRDQAGKEAV
Ga0214921_1000167857	F008490	AGGAG	MKNSENGMMDDMGMEEDLMPYPASDKQYPNAAKYSSYESIQTGAMGKVAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10001678

Overview

Ecosystem & Geography

Associated Families

Sequences