Scaffold Ga0214921_10001554

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001554
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38780
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (83.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021295	Metagenome	219	N
F026563	Metagenome	197	Y
F051079	Metagenome	144	N
F051887	Metagenome / Metatranscriptome	143	Y
F056555	Metagenome / Metatranscriptome	137	Y
F066722	Metagenome	126	Y
F094799	Metagenome	105	Y
F095379	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000155417	F051887	AGGA	VASTYYGVKGDFAWKLDWHNPWLPHKNTNSTHLPGLMRESDQVWYQGPRGGVQLIKSDYWDYWATYLRRDSEKMKQFVWVKLRAQELGLK
Ga0214921_1000155422	F095379	N/A	MTKTYLFDSFLTVLQLKKLSKSGGRKTNCNIIGSSTADWYLVQLNKTSTRDTKRCLSKQALVFERDSRKVSSLTTRIGQAHFSGRELVLNEYAKEARGLSMLISTHLLST
Ga0214921_1000155426	F021295	GAG	MHEFEDDPVYNYAKHVMFQIMTVLYMNGRREAHVGAIMRLLGVDEDHARLHDDERIELDENFARLAAKLNMNELVSAQVPQGTTIH
Ga0214921_1000155437	F026563	AGGAG	MTESVKLYCTQDEDTGEWLVWFPHPLGGMNVIGTFADAEEAHRFWADQMDSADFGDKE
Ga0214921_1000155439	F051079	AGGA	MNEWDRNNLHFILDSDEATLEDFYSWATEDDLAYALSLVREAKTELLLQEADILDELLTAATAADVADASAVLRKFQL
Ga0214921_1000155442	F094799	AGGA	LRNPEYPHGMILTWHDDYNEMSRWNEMLADIVQVFGLPGARYITDVNANNMTFWFRDHRDALLFRLSHGHSELRQD
Ga0214921_1000155447	F066722	GGA	MEAGNTKTRFDMEQEIMQAWQVLDDVKMLSARAGTTKEDWDAVCRLYQIRFETLFETFEHCIKTGTVL
Ga0214921_1000155457	F056555	AGG	MNLKVKAAAIVAGIFAGTIVAQGVIAVAAETYGAQAVVNTFVGGILVFLIYQMYTMVLATLERNKEIEKLAKKD