Scaffold Ga0214921_10001547

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001547
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38858
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (83.02%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023293	Metagenome	210	Y
F032573	Metagenome	179	Y
F042903	Metagenome	157	Y
F065710	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000154717	F032573	GGA	MKNKMSEAWREWWLITHGKNTPVGSYNPLEAHMYDAWVAAWDAANEQSQVEINHLKEQLMRANTNDGAYKAAFLAGQMAARGGSWK
Ga0214921_1000154720	F023293	GAG	MRYGILDDEGNVVRWVWHMPPYPHIVQKIKRQRKPKTDTSKVPDAPF
Ga0214921_1000154723	F065710	GGA	MKWKTERPNRNQLWGMSPSQFKTMLKRKGYKVGRDFFKFAAVAYKNNRAYRFRYWSFPEFFVDVSCPLNEFDRWANSTDRVLTFANWIES
Ga0214921_1000154728	F042903	AGGAG	VAKLPYTFTICPDQEAPKSFTASCKEMGRLVMNSPDGDLTINQKRIATWDAWSGNHMGFIEEKLQEMFQKLREKNGGEIRNP