NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001441

Scaffold Ga0214921_10001441


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001441 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40615
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (72.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F004092Metagenome / Metatranscriptome453Y
F004475Metagenome / Metatranscriptome436Y
F006885Metagenome / Metatranscriptome362Y
F018928Metagenome / Metatranscriptome232Y
F068817Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000144112F000264AGAAGMTMTFLKQKLTNNRMASKLYTSEVFMRKRYVMDKKTPEEIAKECGCTVETVYVYLAKFGLRKSKR
Ga0214921_100014413F004092AGGMSNQKFSVYPGKWPCKTCDEVVTSLRLWQETGTVSWMCSKKHISKVDLIPNKKRKRDYLNEK
Ga0214921_1000144139F006885GAGVDSLKIFFYALPAALTFMAVWFILKVSNKDRKIFLKKITYRQSNIYEIIKDVIPKEMFDKPKVITQSQKHVQKNMLKVVIADDMAYWTVDNVFYTANSINGRIDESTIKPIDMYSMSNKELKKMMDILDDLNKGVGPNDSSSAGDDRI
Ga0214921_1000144141F018928AGAAGMEKIINKNDNLLWDGWDVIDLKESDVAKTSVNGIRIKDKWYIHKVYKPGRDGWDIPNKYR
Ga0214921_1000144163F004475GAGGMSNWTEELTEKQKEEIWEFIVFTVKEIRDQIAVDIEGTSVLWKAKGLNKSRRTQKAFEISAAIARGQNEVQTNATK
Ga0214921_1000144173F068817N/AMSNVDDFLKDPWKHFNEMRKTPHVCDYNYIVDSISGQPAFFEICKLCLDTKGVIEMDN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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