Scaffold Ga0214921_10001379

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001379
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41719
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100013794	F009669	N/A	MKTMLSKIFGQNWRSSSSGIATVVAVCTSIAIHSDPSLVAFLPDPAEVYIIGISKLVAVVSGIIFALTVKDAAVTGGTVAQTSEAKDRTNGENIXINYN
Ga0214921_100013795	F014229	GGAG	MNKLQLVAVALLSIFLGACATTNTGKVDVGTSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTVGTTPTPEQLQKALNDYLPAEKTHWANYVTVIKDLYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE
Ga0214921_100013797	F010817	AGGAG	LKKFANVLVLNFLLIGCATVTPNKIEDDKSSYDATTPKQYDKDNGGLISFVGDDALITNQARERYNNLIEMYKIKFKKEKAIELKIDSGIKAYKDNFNNNLYLIDSEHLVYFGVLNSWLKEKVPQDNIIDKVIDKVN