Scaffold Ga0214921_10001273

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001273
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43555
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (81.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004793	Metagenome / Metatranscriptome	423	Y
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F029091	Metagenome / Metatranscriptome	189	Y
F054812	Metagenome / Metatranscriptome	139	Y
F068570	Metagenome	124	N
F103142	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000127313	F103142	AGGCGG	MALDYKGFKWGERISADEDSVDKFLHEGLVPQSPSTGDLWSAAEWIATYGSENAEEAQGWANVVAFLILTAESKQKRSITAEAKRKYAKENGLKVSQVRIKKEQK
Ga0214921_1000127315	F029091	GAGG	MSQKAIKKIGQYRLYKVEGYGIYEIYYGTKATGVHVENIADKENFAWAVDEIKQGVQQAVREGYGIGVSN
Ga0214921_1000127336	F006261	AGGCGG	MADTRSSGYTTTEPIQIAATGIWSFTAPESPSIRVTSLRVQQPLNSSIVESYGVFKPLGASKTVVVASSIYGVDGSYQFTTQGETEWDALYPVLIYQGILYVQDPLGRAKYVRFVDRTWVESGPIGSLIRDAKVNYFEVGAP
Ga0214921_100012734	F004793	GGAGG	MNLIEAKKIVGNQPTWALKNMVKALNMLPWLNTAEDKERLVAAKIVLKERNKK
Ga0214921_1000127345	F068570	GAG	MLMAGTQQPMSSNDAGNVTGSSSKVRRAHGVSDVPAVNPKINQDEFTHALDDLIGLGRINDGCSVGRITRELPEPSQTKFKEALLNEKVNSARLVEVLATFDITVGSDVMRRHRRRLLGKDGCKCPRES
Ga0214921_1000127348	F008607	AGG	MADAIYSKVLEFMTDTVTFTGKSSVDKYNKPTFAGTVTSAVGRLVYGASKTYDVQGIEVTDIGYFITYGPQITLTAGHKMVFGAKTFTINGVDNISDENGAHHTVIRFGH
Ga0214921_100012738	F054812	AGGAG	MNEQEVNEKFGDIIQPKIINQVIKQKRPPAKFPELRYLWGIALLGSFVLMVVSATIQTLLGL