Scaffold Ga0214921_10001178

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001178
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45302
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (86.75%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004477	Metagenome / Metatranscriptome	436	Y
F022885	Metagenome / Metatranscriptome	212	Y
F023846	Metagenome / Metatranscriptome	208	N
F035309	Metagenome / Metatranscriptome	172	Y
F037059	Metagenome / Metatranscriptome	168	Y
F040104	Metagenome / Metatranscriptome	162	Y
F074883	Metagenome	119	Y
F077305	Metagenome	117	N
F085712	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000117816	F040104	AGGA	MSSGYTVELDWETVDHVVVGQLRNTWEALKGNLGNGDWVFVWGDQEADDVEIQKHIDALELLLKWYSTPDELVEMGLKEGA
Ga0214921_1000117818	F077305	GAGG	MEQNKVYTIKLMSGEELIARVKQTDGVTELLKPRTVGMGPQGFAMMPWMMSAPDNNVVISDTVIVGATETSQQVATQYLKQVTGIQV
Ga0214921_1000117825	F037059	GGA	MAQFNTGNNSFQAVNKTLFEVNQIATANGSLVTTGNPFPVTGTIITAEEAGALYSFNNHATNTNRGWTMDDTMRPVVSFRNGSANTADLIKIIEYEIGNNNANQSTIIYEWYEGDIAITGAALPAWTTFGVHSQYRVYQDKYSSNQGNAFTANGSIMRHSGIIIGKNSSADEGPAEMHGGSPNMLTLCMKRVDNATKLDVWFAFTIKELI
Ga0214921_1000117832	F023846	AGGA	MSDRAKKITELTSIGTANTSIASGDIFIVEDISANTTKSATLSTLRKAIVQGPFANNTAANTGGVALGQLYYTAAGDVKVRIA
Ga0214921_1000117838	F004477	AGAAG	MSLTSFFSSPPITSFEQLELEKGKIQLTIMKMAATVLGAIMLAVVAIFLIGMFMPNELIDNNEIFKIIGPAFSTIVGAFVGAFATMMGMKVTEFDPNVKTQELGKTDHKALAEAHVINAQAETIETENEIKMMAAIDKYKDSDEDYGPF
Ga0214921_100011784	F074883	GGAG	MVNYKIVNTGKIVDVGGGFGENTGDILETKTDQIVIKGMRMSKAKEMVRHLNFGGGFDGSTPAFFLAEREKTLELTEELV
Ga0214921_1000117843	F022885	AGGA	MTELVDNEFGVEYEKIPIKRLRIFRVGKQWLVEYQRYVRLWAPWDHFWWYNDGQYVEYYDALARVNELKANGYANVPRFQKVKTFDVSSE
Ga0214921_1000117881	F085712	N/A	MVEENGTYFVGMSFETEDDDEIVFPVMFHTKNYKEALTLTRCIAAGDPRKRVMFADIDEDYI
Ga0214921_1000117882	F035309	GAGG	MKKLIASLVVGSMLISTPAFADHRRDRNRDHVQQERRKAGCGWLCGAIIGGVVVGALSSGNRDRERDRERERDYEPYNEIRYYPPDYRYDRRYCVREQITEWRGRERYVYWETRCN