Scaffold Ga0214921_10001049

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001049
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48119
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (81.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004405	Metagenome / Metatranscriptome	439	Y
F009882	Metagenome / Metatranscriptome	311	Y
F012455	Metagenome / Metatranscriptome	280	Y
F017131	Metagenome	242	Y
F017265	Metagenome / Metatranscriptome	241	N
F022813	Metagenome	212	N
F084151	Metagenome / Metatranscriptome	112	Y
F093770	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100010491	F009882	GAGG	MGSELQDAVTIDKLEVPYNSNLLVTYKAIPDTYAAPEEPTYLTSKVTEIEWELHNGRTNKKALNNMRTTINTLEEQIVEWFDPNYSKEEVLVAICEHFGINPVKEIEVEGTISFSGTISVPMSDLAEFDISNVTIEADLNSYDYDADLRVDEVSVEEQY
Ga0214921_1000104913	F093770	AGGAG	MIALKHSINLITEIDENKMPDNLLTAFLNLSELEMEKMLRSAFINALIYEGFLDKLNENNQWAVLKVGDN
Ga0214921_1000104918	F012455	N/A	MIKEIKNKIIRIQELRRSNAATAIPSKKKYTRKIKHKNKFD
Ga0214921_1000104922	F084151	N/A	MTITYSIWQGSNLLSINNIANNIKDVDKVIAELNTSNVANKVKFSANIMKVEVNK
Ga0214921_1000104932	F017131	AGGAG	MAFPGTYNFNYYRGDTAQFVVRPKAANGTAFDLTGYNADFFIANVRGPSATTYLEGQAVVNATTDIVTCTILPGVGRDLEPGTYVYDVQIDSGASLIYTILTGTITVTQDITGSIES
Ga0214921_1000104958	F004405	GGAG	MTVCETTEFMFPMKADIYFPILQQGDYGQPKKDWVYDRTIICNATPVGGLGNEDIKPEAFLQYENKLIVRTKNDPRVSSNNANNAITNILVTNIRDAGDVVIYRETAGPRSGRGTIYEVATVEPFTGPFGSVEYYKMLWRRTENQTVGD
Ga0214921_1000104959	F017265	AGG	MIVTMNSKSFEMQMNNIINYSFGFLEGVQKGKKIFLDKLGKGVIQALAQYIDAEARSNPKALHHVYEWNQTGSPTSRLFDLNYTVSNLGLSINSTFRQSRTVSENMTVPFYNKAKIMENGIPVTISPTKSQVLRFSGPSGDVFTKKPIKVDSPGGDEVFGSFESTVDIFISRYFKQSFLRASGLYDYIKKPVLYKKNFAAGSKLGRSKGVDTGFKWIANAIIGVE
Ga0214921_1000104960	F022813	GGAG	MTILTDTGFPPTFLNGYILSELAHYNLIADADLVNPSPMVPAQFPTNIEDLYNDSIIIRQTESPLLVVYDRLMRFRPTPFYARKREQLIYFLYSTDVGKLIDSVRVISNALDREDSSAQDINSWAVNNPILNSQGSVIPYNIFFHNTRVYQADESRDVAELASARTLFVNKIIVEYDYHIKTEPDSRYT