Scaffold Ga0214921_10000972

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000972
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50369
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (82.26%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F001106	Metagenome / Metatranscriptome	776	Y
F002501	Metagenome / Metatranscriptome	553	Y
F004006	Metagenome / Metatranscriptome	457	Y
F018177	Metagenome / Metatranscriptome	236	Y
F023341	Metagenome / Metatranscriptome	210	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y
F060898	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000097212	F000369	N/A	MSEIELSQHFDRMNRVVEELLKGSTATQIATITGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTSGQLGIKSGALKIIADIETKRIAMLQSIGVLENNEIAAQIAETERKQDILVKILKETTSTCPKCKMEVAKRLSQITGVVESVPVEEADVV
Ga0214921_100009722	F023341	AGGA	MPVYEYKCSYDDAHATMSVNRSITENDPGYTCVQCESQMIRHFTPFGIQFKGNGFYKTDNPK
Ga0214921_1000097224	F018177	AGAAG	MPNINEFLNKPEKIFPSELERIGGAKPCGKCEKDASEYFWDAVSMTISWECPDGHKNSYVVG
Ga0214921_1000097227	F004006	AGGA	MTDDIEGLVTSISMNQVLVAILEEHGKIVVPTLRFLDANVNNKELVIDYDEEGPSFTFSLRDIDAIGSDSD
Ga0214921_1000097235	F002501	AGG	MWCGKCGGRVFVDRVFSQKLHMELFCIMCGKRWMCNKETSAFGRWLDKKETANLKNYGIS
Ga0214921_1000097250	F060898	AGAAG	MPELIQTLKSFKKQKSEDRKFTASLKGIDLDVDEEDSGTQGKTFDDIQRQAQGIKASGDDIVSLQGSFAAQAGFGIGAGLGYTEE
Ga0214921_1000097253	F000258	GGGGG	MTVDYKADIMLDLRKYLWDQLKSNNIFTDTDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANAYSGISRKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHLDTTGRFA
Ga0214921_1000097255	F056615	N/A	MYDLADSIMPLFADIYKQFDIQDPDTGSIKKQWQFDRTVPCSAKGIITNSASSRSGDKQIISNKYTNYQSLEIRTSEKLTLREKITNIRDAEGTVIWEELNFPTNTPTVYELMGTTPITDPFGGVIAYNSSVKRSENQTIGQ
Ga0214921_1000097256	F058150	N/A	MEILVGSNSPVTHKVFWQGQLTDSDSLPVVKLYDITEDPAISPAINPATILATLTPVKSEADAGTYIVYIPLTYTDRQRQLKLSWTYTVGGVSTQKDNKIFVQTPYTDMTQVIDSLGLGSDYSDPNSKSYAELCNAEKYARKLIEAYTKQQFFLYDDIQIAYGSGSDVLPLPYKITTLYKLYQNDILLLDTINSINNWNYNTIISESGFGIRVNRANMLDNTVYTANGMVPPTINDTWNGSFNTRSTYRVQGKFGWKDIPDEIDLACIELMKDYFSKDKIWRNKYIKNIKTFDWEFEYNSGTYSGTGNLYADQLLLPYVINQMVVI
Ga0214921_1000097257	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGLKNKADIVAALTEEGVTWSVYQKTIKDIEKAADEFSEDAEEILPRFNPDAQPENTLLVRMTRENYRYDILNYTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYA