NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000884

Scaffold Ga0214921_10000884


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000884 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53344
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (86.08%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003640Metagenome / Metatranscriptome475Y
F004305Metagenome / Metatranscriptome444Y
F015965Metagenome250Y
F020493Metagenome223Y
F048114Metagenome148Y
F082122Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000088411F048114GGAGGLTGLISGKRVWNEGEGDDEYRHRCLVRGIIKMRVKDRQEAHVWLFGGMGKDGKYFKGWNALHPDSRLIEDIKDQWSKGNRGSDGEWK
Ga0214921_1000088421F020493GAGMLWCIAMWIVFCGFLIYLTELSRKEEVYKLNCELLMGGWHPDIPKEFAKFCEEAKRTMRSDR
Ga0214921_1000088438F082122AGGAGGMREETLLQKIAIVIMFIAALLLMVWVPDFTLSQEDCTKQSSYAYVDNLCSQSKTN
Ga0214921_1000088443F004305AGGAGMATTDKEQMSEETNQHHRMASGAWITGCELKETSKATMPEANSDHGNFSQPKGVDKSNA
Ga0214921_1000088470F003640GGAMAIALVYDPRYHTWNSWTSLMCEAYAAQQLSINTPEEEWKQWAAGLKAIDLFVNEGIPSPYIYENWQDWASALVGAVNQSTEETAT
Ga0214921_1000088473F015965AGGMLVDSKKKELGTEAILMIAAQETKSKYPASTIYAAMVKEMNMQGTSIVRNGNTLFVVHNAEGRVGVFRALNADTARNYLESSYAFIQGAYKMGFDTLVSEFEDPTIMNIFKAISRNPPQEGMGYRAEKTNKGFRVTVKLGPKRAERE
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