Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10000866 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10000866 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	53776
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (74.36%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

53776

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (74.36%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014850	Metagenome / Metatranscriptome	259	Y
F015996	Metagenome / Metatranscriptome	250	N
F020540	Metagenome / Metatranscriptome	223	Y
F021534	Metagenome	218	Y
F028172	Metagenome	192	Y
F029659	Metagenome / Metatranscriptome	187	N
F084232	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000086628	F029659	AGGAG	MLHNINSAIDTFQSTKTQFVKTFVKNEELAKPLNTFIEAQTLYAKAVAVEVNKFFTTLGMSAYTFDAKKAFSKTK
Ga0214921_1000086635	F014850	GGAG	MKIDEDFELTQNDIKYKDKDVVACVKIKTGEFKDVEFHFGEIKFAEEENPDGTFSIDFNYDIMSEQHKLLEGNQMFETQLGEILNELLKHALDEAEKRYKNELGTKDTETPDIG
Ga0214921_1000086638	F015996	N/A	MIKVIEWYNWIVKSFGEICGWVGLILIHGSTVPATYLAIKGEPTVLPPLSMVVLIWSGLLLFFIRSAIMKDKLYMLSNGIGFFLQSIMLAFLVLK
Ga0214921_100008664	F084232	GGAG	MQTPIPAQLENWLKIVENKRSPQDLRATAVLHLTAIRDIINKSLGATTNNQGRKKYENMSIR
Ga0214921_100008667	F028172	GAGG	MKILSQYFGQDLDRQAEIYFDENFYKVRARNECGTYFVAFFERVDDAENFAENYVMGETHEP
Ga0214921_1000086676	F021534	GAG	MKTKTENEVIHFLKELLHPEGFGWAVTPEVSRESKRLLIMIESESNEQDSTIRQTA
Ga0214921_1000086677	F020540	N/A	MSKIQQFGRPHETFDPNNKRHRKIFHDVMQYRTWGRSPICFWAEDDSSGSNSLMDQCIKAMGRYYMEKEFGEIRDNDPFLSGETVRNRPNPHPYIYTRKSILA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10000866

Overview

Ecosystem & Geography

Associated Families

Sequences