Scaffold Ga0214921_10000814

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000814
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55497
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (83.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023061	Metagenome	211	Y
F032959	Metagenome / Metatranscriptome	178	Y
F034897	Metagenome / Metatranscriptome	173	Y
F045610	Metagenome	152	Y
F068568	Metagenome / Metatranscriptome	124	Y
F091378	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000081419	F032959	GGA	MEKKVEYSDFYLHAVKEIKAAHNALVANEFQKAYDHCMNAQAEIKLMGGAVKTWIPVEE
Ga0214921_1000081431	F068568	AGGAG	MKPKKAKMFVEGVDMRTYRGTADPHHVAGRTSRSVSEAFKDATYACAIERHKSDLRHTLEFFSEFFMTLFMGGCAIALPIFLFIWLTK
Ga0214921_1000081444	F023061	AGGAG	MDKTFDVLLLELDKDIAQKRDWVASGQAKDFADYQRMCGEIHGLLIARQEITDLKQKMEHSDE
Ga0214921_1000081451	F091378	GGAG	MGMQYDVKSTAIAAGQTDAAVFAGAARIKGMVIGVPTAGGTLTLKNGSAGTTVLSIVIPANAGGASNVIIPGEGIRCDNGIYATTPANMTVTVFYG
Ga0214921_1000081454	F045610	AGGA	MKHSDIKKDMPMMKKVAAAAVKGHEKRMHKMAGGGLAAGHKSADGCITKGHTKGKMIKMAGGGSC
Ga0214921_1000081461	F034897	AGGAG	MGFKKGADGITKQGKTNPKIYPNDGPHIVDKGPKPNKSSLNKNMKAMGRNMARIANQRGR