Scaffold Ga0214921_10000781

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000781
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56710
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (75.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021295	Metagenome	219	N
F023035	Metagenome	211	Y
F047670	Metagenome	149	Y
F051079	Metagenome	144	N
F051887	Metagenome / Metatranscriptome	143	Y
F056555	Metagenome / Metatranscriptome	137	Y
F066722	Metagenome	126	Y
F094799	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000078111	F056555	AGG	MNLKVKAAGIVAGIFAITIVAQGAIALAAEVYGAQAVLNTFVGGILLFLIYQMYTMVLASLERDKEIEKLAKKIDQ
Ga0214921_1000078121	F066722	GGA	MEAGNTKTRFDMEQEIMQAWQVLDDIRMLSAREGTTKEDWDAVGRLYQIRFETLFETFEHCIKTGTIL
Ga0214921_1000078126	F094799	GGA	VLTYTLERCILQNPEYPHGMILTWHDDYNEMSRWNEMLANIVEVFGLPGARYITDVNANNMTFWFRDHRDALLFRLSHGHSELCSA
Ga0214921_1000078130	F051079	AGGA	MNEWDRNNLHFILDSDEATLEDFYSWATEDDLAYALSLVREAKTELLIQEADILDEILTNATADDVADASTMLRKFQL
Ga0214921_1000078139	F047670	AGGAG	MKIHNEYLWLVLVVIVIIVGPLLSIWSLNTLFPVLAIPYTFETWLAVMLVGGMFRGSFSSKKD
Ga0214921_1000078143	F021295	GAG	MHEFEDDPIYNYAKTVMFQIMAVLYMNGRTEAHVGAIMRLLGVDEDHARLHDDERIELDENFARMAAELNMTELVSAQIPQGTTIH
Ga0214921_1000078150	F051887	AGGA	VANTYYGVKGDFAWKLDWHNSWLLHKNTNSTHLPGLMRESDQVWYQGPRGGVQLIKSDYWNYWATYLRRDSEKMKQFVWVKLRAQELGLK
Ga0214921_1000078188	F023035	GGA	MNPVTKTLLLTMGTILAMVAVPAVLIIFHVYLNAFFAIVLVLTCFVLFAYYTYQEFLPEFQQAQLEEEQIMHRFAGDPEKIKFYRGFKKHFDGDLNLDELKQWLIDHPRKH