Scaffold Ga0214921_10000659

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000659
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62053
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (83.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001817	Metagenome / Metatranscriptome	630	Y
F042220	Metagenome	158	Y
F046257	Metagenome / Metatranscriptome	151	Y
F057193	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000065926	F001817	AGGAG	MMQTDVKSAHLSVAGSYYVGRTRLRGFIVNPKASTAATFEIRDGSSTGPILYTMDIASIGTPNTFSMVVPGEGILASVGLYLTISVGSVTGITVFYG
Ga0214921_1000065930	F042220	GAGG	MDNFIQKQIEASERLYNMMMADHKERFEKIAAVYDLSEHLQKKINERDAEIARLRHKLLAYESVERM
Ga0214921_1000065956	F057193	AGGA	MSIETFNYKQIVTWVNNVWAKSLTAVVMFFVGLAVGQVQVEGRVVGDCKYAGVFRVNHEAFVCQRRI
Ga0214921_1000065968	F046257	N/A	MPKPKKFDFDWEAVINGNRIGVHQVIESIRKGEVDEVELEKLQNFVQFALALMQLCGPQKWAQAKLNAELMNYLKDTP