Scaffold Ga0214921_10000656

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000656
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62429
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (85.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005117	Metagenome	411	Y
F020509	Metagenome	223	Y
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N
F058568	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000065621	F020509	GAG	MSNPVTPFRNNLFGSRGMDIQSALDYSEMMINTLSATDQVAVRTAFGVVINTIDSAVTQSQGPSPVEEALFAIIDKRIAVLQINTQVEINASIDDWMDNNLRDKMMDILANDDIDDQISNWMSNNFDITDYNVDDAIESWMDNNLDDKVTDAARCLTFTVEVSR
Ga0214921_1000065632	F039000	AGGA	MTKKTDAPDKDIEQIMDDAQTLLNFCGNTYVKPADAWFACLVSSAILTAELSVPLEKFLEGFEHAYNDAMKAKNAMKGPTYDH
Ga0214921_1000065633	F031377	GGA	MITNAHEFISASSTNGRVTPFNTGKVQIGLLYQPKPPEMTSSEELVQAALMGWSSIHRPVPLWPVTLGSLVVGFLIILTVG
Ga0214921_1000065634	F028744	N/A	MYEFLYECDELGLGLKCFFEYEPAEVGSVEPMSGLKLEPDYPEVWTLVSVFLPNSSVDLSGVLHPDVIFRIEQDAPIYFEEMRNVI
Ga0214921_1000065635	F045551	GAGG	MTEQRELELLRPYVAACGEFVTKNAELEKHLKAIDRLLLEVLMGDIDPMQAMINRQKIKDEYEQP
Ga0214921_1000065666	F058568	AGGA	MPPIRVEKAGEIILKISALSTSFAHRPNIKLITIANTEIHRVVLTMSVTYSVSLSLVSGVGLEGVLGIGFLVIQVCQSRV
Ga0214921_1000065667	F005117	GAG	MKISYDKWYPIVQPQVNVQAEVFAKRVERLDAERALQVQIDQQVKKFHQYEYEIYEYRMRQITVNIDITNLKREIDKLV