Scaffold Ga0214921_10000543

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000543
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70153
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (80.72%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001464	Metagenome / Metatranscriptome	689	Y
F003408	Metagenome / Metatranscriptome	488	Y
F068743	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100005431	F068743	AGGAG	MPWQIKQNAAGCSGYAVVKQDTGELVGCHSGRTAAEAQLRALYASESDA
Ga0214921_1000054331	F001464	N/A	MARQQRTPTPKKFLYFFLNDKIHKVLKSSRSRDELVAWCYPDKKRVMYSYSQVIKYMENAFTTAQVGEILGKHKVTIEDYILEGKIRVPHRVYPIGNPDSKWSKYMFNQKDILELHQFILDDGHSSKLPSKTELLAILKHNTILYTKTEDGKFVPVWKAE
Ga0214921_1000054343	F003408	AGAAG	MPELIQTLKSMQKTESEKRRFLASIQGIDLGKDSQEEEGPSFEDVQRRALGINASGDDIVSLQGQLAASAGFGIGAGLGYEKG
Ga0214921_1000054346	F000258	GGAGG	MVNYKLDAMLELRKYIWKRLKDTDIFNEDDYYSENIGDITVPIIPVQQVAELNQFLSGKKHIVYDKIGMSYEDLWAICCEQILFTIYSTDVSEINEIRNFMTDEFRRVDESARDVNNWVDLSDKFQFYSIFIADISPTEPSQEMEGFLSADIVLEIKYSRLSGANGRFI
Ga0214921_1000054350	F001106	AGGAG	MSFDTLKVAELKKIAEDFAVETTSLKNKNDIIAALSEEGVTWAVYEQTIKKIEEEAEETEVAPRFDKNQKLTEDMVLVRMTRPNFRYDIMGHTFTKEHPFVAMSSDKAQAIFDKEEGFRPATPKEAQDFYS
Ga0214921_100005436	F000369	N/A	MITIEIELADHYDRMNKVVEELLKGNNPTTIASLTGFKRAEVVELIDEWKSVVHNDTSSRERAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKANALKLISDIETKRIGMLQQVGLLDNAELAGQIAETERKQDILVKILKEVTSGCSKCKMDVAKRLSQITGIVESVVIEDADVV