Scaffold Ga0214921_10000539

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000539
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70800
• Total Scaffold Genes: 126
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (67.46%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011754	Metagenome / Metatranscriptome	287	Y
F012023	Metagenome / Metatranscriptome	284	Y
F014503	Metagenome / Metatranscriptome	262	Y
F015331	Metagenome / Metatranscriptome	255	Y
F016501	Metagenome / Metatranscriptome	246	Y
F019433	Metagenome	229	Y
F042897	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000539102	F012023	AGGA	MEKIDYEKLNERIVEQAYENVLTKEQFQKLIQDKFERARIYHEAKVKSPTFSVN
Ga0214921_1000053925	F042897	GGAG	MATKEAVAQLALLPERVAVVEIKVNNIEDKLVDLKSDVKDMHDCLDQTRETVVAQLHMMTDEYRSNAEKYYEHANTLNAQQTAQHEELAGKISELEKIKSKWTMYAMVALAFAAGSGWVNAVNFPHILKFLGL
Ga0214921_1000053929	F016501	N/A	MRFFEFQGDDNGVDKFVMILRNLVGRASSKKAPAKLNWAALSKMAQDTGVELAADYETFKSMYDSNPVIQTLVKNFNDDGVELNVPGAPDSAPKGDGTKGPEDSQAAVDQTAASAAAGQLAQAQATPQA
Ga0214921_100005397	F015331	N/A	MINNDPQYWTSLKWPAAPNLDDYAVFEHYCKGRVLLLGSTRLLLPLCTEAWDLEPVYDDPKILAKDWFTLDSHWDTVIIDGGLSYGEEFVKRLLPIVLKHCDTFVARAFLNPNWPTKYAVYFPRAEELDPQPQEHPVNEVYTFYIWNNKQY
Ga0214921_1000053984	F019433	N/A	MAKTKVGSLNDILSTRSRATFPYRVNFDSMKRTQIEEMAVWCITNCKGVWREEHNHAFYFQFEDNLDATMFMLKFGDK
Ga0214921_1000053987	F014503	N/A	MRNTSIHYWRFDDGTKPINPGNPFGEMFVPRGWYCWVYPSDDQEFANWMERMCPTADVTHRFNNGNPMWTVYISDDAEATLFQVRWMG
Ga0214921_1000053994	F011754	GAG	MKIGFSLGRCVRDIVNGDVAMDDVAFVIAATAIRDGEEHLEAVINDYLYRPDYLEDYDHDECQRVAKELWDTNRILQPRLQGLHRHRQPENSVWVDMFPTHLSENASVKTAWEQYRFMLHMVENVDNEAIEVFKS