Scaffold Ga0214921_10000517

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000517
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72113
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (42.98%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F004130	Metagenome / Metatranscriptome	451	Y
F027508	Metagenome / Metatranscriptome	194	Y
F029716	Metagenome	187	Y
F052555	Metagenome	142	Y
F055679	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000051710	F052555	N/A	MTTTSTRINEYTVLKRILKELNEVVARESKRPQGCEDLTLSMLALLKEEIIPQLENEIEHDLDYDPTPQYLYDNTGGEPPVTMAEMHACAWQQHQEMHS
Ga0214921_10000517109	F027508	AGG	MIPPDNTTDSSFDIDRFEQLLNRLEASKGRQQRQKSVEGRRDIFSQGLAGMMSNF
Ga0214921_1000051731	F002333	N/A	MTTTATHTELNAAQTTIYTRTNILRAFPDFDDSGVVGIYLRGDSCLVVYRDGTERLYPKDAIKTTFISYTHRLKDFFSYLGPNYRGPSIWHDNSYILFKGWNYSHTLGHLNDNAKLQGQWADKFIRLTDPTKLKALLQSEHTDLGHLVAPDGLRLPDRLPDLDSELETVQEERPMFGEPNCSCGSFQRQLNNLPLFQQEIEGFKPHCIHLTWIAKYRSLLSKRTEARDACPAGVPHTCVAWWYQPPMNHTSDGRFLLLHTKSGVQAPLSHWRTYKPKESFTQRHAWDLFFSMLDAGYVPFPGTSLPQLRMAFKHD
Ga0214921_1000051734	F001018	N/A	MAQITSTKLKELSVIKLYEHYAALEKSLPLLTSESQDLAKAELESCIDLRSEKVDRIYYAMAAHEDALERIKKEGDLVATAKLHHTSQLKSLKGLLSYLRRVLPLDTNKITGRNYQFTLIKKKELTVEINSDPELWNIDEKSTYCMEEETTTTKRVVLRSFSGEVLSDRTEPKTTTKVLPNLDVIRCAYQNGQQLPTGVKVVQDYSVRSKRIFNESRMDLVASEYPRELLPEDSSAD
Ga0214921_1000051735	F029716	GGA	LHPSIQESFYLKIPAPTNVDDARIKMSCHDHALKDFDLQLEMNDLQADMLKDNNEVIPYHGDEHDDLEAKRLKLLFGKRFHQNASNAYWYWLQKEKPCSNKVN
Ga0214921_100005175	F055679	AGG	MDLATGWQKHLGVTGGYQLFYQDIYIGEVSIVTGPKGSGIMGNNDPGQEPTYEVWFPGAANPIGYLKLDEIKGIIKYLHQLQNDFCK
Ga0214921_1000051777	F000973	N/A	MYTGIPKGLQDIVAELKSIKHILASMWHSRYQEGETDQLNPEAYTDEYISTEECGRRLGISDQTVRNWISIGKNNPSKGWVEGLHYVNASPNPGKKALLRIPWNTLVRSFAKNKKIDQADLRDNLPSMYCTTTAEKVMENGTPL
Ga0214921_1000051783	F004130	N/A	MHNNAAGFLDGFMDEVMCRCIGEDDFGQPLANQNNDVPLQDMYNRGLVAPMRGLERNPLHIEGMKRPGVSGLIPSMEEGVALGASPKPHTLVLELPEADDEMKIQSAKRRGLMR