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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10000506 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 72541 |
| Total Scaffold Genes | 62 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (37.10%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009669 | Metagenome / Metatranscriptome | 314 | Y |
| F010817 | Metagenome / Metatranscriptome | 298 | Y |
| F014229 | Metagenome / Metatranscriptome | 264 | Y |
| F038565 | Metagenome / Metatranscriptome | 165 | Y |
| F043788 | Metagenome / Metatranscriptome | 155 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000050615 | F043788 | GAG | MGSLDDVYDLTQKLEDSNIEYLLITVQKGKKQGKADVFFHLKDKASMKILATGLAAFDKEIDKIRKEQEEKDDE |
| Ga0214921_1000050656 | F010817 | N/A | LKKFVSVLVLNVILIGCATVTPNKIEDDKSSYDATTPKQYQKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLNEDSGITPYKDNFRNELFLIDSEHLVYFGVLNSWLKEKVPQDNILDKTIDKINN |
| Ga0214921_1000050658 | F014229 | GGAG | MNKLQLVAVALLSVFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQAVSGSDRIEKAKMINHVAAIVEGLTVGTAPTPDQLQKALVDYLPEEKTHWVNYVSVIKDIYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE |
| Ga0214921_1000050659 | F009669 | N/A | MKTMLSKIFGPNWRSSSSGIVTVVAVCTAIAIHSDPSLVTFLPDQAEIYILGISKLVAVVSGIVFALTVKDAAVTGGTVAQTTEAKDRTNGENI |
| Ga0214921_100005067 | F038565 | N/A | VTNKKKFNFPDALLKQIDECSFGGYVLFNFSNKGEPQVFTKFDNQINAMALLYYLNTWSQSVDQLNLEATTDLIARKNDEDNEEDED |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |