NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10000441

Scaffold Ga0214921_10000441


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000441 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77402
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (34.04%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035218Metagenome / Metatranscriptome172Y
F038565Metagenome / Metatranscriptome165Y
F039478Metagenome / Metatranscriptome163Y
F043788Metagenome / Metatranscriptome155Y
F050171Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000044114F039478N/AMLNPKGKRKMLKKILDFIDGVFEEEKEQPVLGTLYKIKGEVLPFRYIRFTNEIYSNKPVYHFKHHQLKEYKFNNLSRVERKANKEEVRIYNLIKEHVNEVAENNN
Ga0214921_100004416F050171N/AMGMFNYIKVEQDLPLNEELKALNIDFKKEEYQTKELEDNAMITYIIRDYRLFELKVDGHWEDNPSYVKGETKFSEFFNKNRWVEDSREEVFRDDYTGTFTFGNYIYGETKESYDLFPDWKCVVVKGLLTEISLITPIEKHSSKDRIESDENFFKKMDDHKSKMKCPVYSFYFKYYVRTFEKIEWKLYNVINRIISFLNWLQWKGIKTLIKVLTPR
Ga0214921_1000044160F038565N/AVTNKKKFKIPDSLLKQIDECSFGGYILFNFSSKGDPQVFTKFDNQINAMALLYYINTWSQSVDQLNLEATTDLIARKNEEDDNFDENKD
Ga0214921_1000044168F043788GAGGMASLDDVYDMTQKLEDNNIDYLLITVTKGKKQGKADVFFSLKDKTSMKILATGLDVFNKEIDNIEREQEDDSDE
Ga0214921_1000044192F035218AGGAMPLTKNPSNIDNFIFAAGRMKMYRVGIAGGYSKVTGTGGVAAFGNTAGMNINLNAGSSASGTSKVGYFDPTAAFMTASAGIIDYSKRIRFSIGGMMYIASTNSVIRIVFGGTGNSTDAPLAGVNGLTVKGFGAEFALQSSVIQARLIGYNGSYLTPTSYTTLTNGFGLVASDNRFFGVVIESDGAGNIFLYGADSQTNPAINIGQTPLLTLTGGPTNSTSSNRFGPEIQASNSSSAPSATPSAILQSTHWLLDVQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.