Scaffold Ga0214921_10000418

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000418
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80398
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (63.16%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F008494	Metagenome / Metatranscriptome	332	N
F012344	Metagenome / Metatranscriptome	281	Y
F012775	Metagenome	277	Y
F015339	Metagenome	255	Y
F020904	Metagenome	221	Y
F027851	Metagenome / Metatranscriptome	193	Y
F038678	Metagenome	165	Y
F078697	Metagenome / Metatranscriptome	116	N
F097355	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000418100	F078697	N/A	MNKLVRIAQQLDKNGQYKAADKIASILLMAIQYKQDLEDGIRALFNYYDERTLTRLLKQTNILENNGDISSRPFDYNELMQELNNFETISPEDMPTRSGNNNYQNLEEVKSSIMKTIEIIDKFQISIANAHDVQREQQKKIQDLQGDIIPDE
Ga0214921_10000418111	F008494	AGGAG	MNKQEVITMFMNAVGQYTKAIDKTAETNITYKKSVYALEDAVNLIYREVDPKELGSNAEARNAKVSEKTQDLIIAKREAEFLLETARANESRIKAEVDQIKYIIRALEVKEEA
Ga0214921_10000418113	F003750	GGAG	MTLDIINRLFYVVVWGGGFFAFWQITKHMPKTLYTLLECISVMSVTVLCMAPISALLEYILGGNIDTTMMFAVGLCGVGLLSGIWMVMVQSSRALQGKKEYQYVIL
Ga0214921_1000041855	F012344	GAG	MKFSEVLDALMEGEPITRTSWKQKYMYYDKDEEVFVYHYSDDCELMDWTLGLEPRDLIADDWDIDYWDTDHIVDGNKKVDEE
Ga0214921_1000041858	F015339	GAG	MEADPKILSEQYVRGRIYSFVRFKKYLQEIAHICCEEFQHNKNDIIEVSLSDDGKTVWIHFDSGTLGFASELLWDQNVRETFRKSFEVD
Ga0214921_1000041860	F020904	N/A	MDKLPKNQKYFYDVEIKKAKLNKAAMNYIDPGEDYLPYALENKHIGSNFDSFLKVNNIELKRDINWAIKMLGHGKMMSREGNPSLTLFPKKYDHAESTITTEDLFAEDWVVVPNKLFKDVLDDLNAGKTIRRKSWHPDWGVGKYARYGKLIYLDLIADDWESVDVVAEVDKHQQDIKDGK
Ga0214921_1000041862	F012775	GGAG	VKLFSQITRPLIALGLKTRSRKWPEDYYIYRVEEKLMDSMGNEFYYNWEEFIRLHQHILNNAGPVWEIYEEVEFNNL
Ga0214921_1000041865	F027851	AGGAG	MSILSNILKKAAGVPEVNLNKLPFANKIVGDWETKSMEDLVKQLPKETIHRLIDVCNNELKTRS
Ga0214921_1000041869	F038678	N/A	MLVIVSGSIGYALKPAEPVDQKELERKYQNQQQVCTAAMHMMADFSKKNYYQPKTKKEWAIERMMSR
Ga0214921_1000041896	F097355	AGGA	MKKKLSPEQEALLSKFKSANNNGAKTSIDNKNEKALTNAPKPQIRRSGSRGK