Scaffold Ga0214921_10000394

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000394
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83215
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (52.63%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012760	Metagenome / Metatranscriptome	277	Y
F021985	Metagenome / Metatranscriptome	216	Y
F040538	Metagenome	161	Y
F057305	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000039473	F040538	AGGA	MEITTVDRPTKIQRVFDFMRGGATLTAGEARKRFRVTNMRATMHDLREAFDRFDMNYNVVRETKNGRSYYRVVRNRSR
Ga0214921_1000039475	F012760	AGGAG	MKIPELVYEIRNLARKEEDPVKKDLFYQCAKSLEILGNLAKISDLAVAEHAAAEAPAINEDDNIKWNVDDVTLKMLDEHIDALVHYGFMDKDDRWPYGDQPFTKFVSKYLKSQIVNDSKT
Ga0214921_1000039477	F057305	N/A	MARGKIQNKKKKPTECASYYFVAHLDSTGEVTPLLLTDPEYRKAQKRAERNPEDVPEDFITFSQEHKHRKY
Ga0214921_1000039483	F021985	N/A	MANDSKSSDHLHAILFREAKIILSKYEDYLRDKLTSKELAQMMLNLRDAIKRIEESK