Scaffold Ga0214921_10000371

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000371
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85343
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (48.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020649	Metagenome / Metatranscriptome	222	Y
F034466	Metagenome / Metatranscriptome	174	Y
F038565	Metagenome / Metatranscriptome	165	Y
F093196	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000037151	F038565	N/A	VTNKKKFNFPESLLKQIDECSYGGYILFNFSAKGEPQVYTKFDNQINAMALLYYLNTWGQSVDQLNFEATTDLINRNNEKEDEEHDDEDS
Ga0214921_1000037175	F020649	N/A	MAMKIKNWWINLKTYDKFFFITFIPAMLFTFWGLSDLYINYFDLLSREDHLQFFLRIFFPISVATFVTVLEHNKRKKLIKDIKNYLKQ
Ga0214921_1000037177	F093196	N/A	MNKIPFIVGICIAISIFYTVYSPHPFLVKQQIDNYGMDFEYVTDEGSCFTQSAEPIGHDSHKYILSLGKPAKPTNSEEPLYVMIGYTMKQVRLKNKSNVFQTPIYKTL
Ga0214921_1000037179	F034466	GGA	MRNLLLSNYEKSLPSKRDTEAFISNFHQYRAKKKAQEKTHYALIFACVLILSMIGSIIAKQTKNNLDIQTASGTEKCNTQVMEK