Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10000370 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10000370 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	85808
Total Scaffold Genes	95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (35.79%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

85808

Total Scaffold Genes

95 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (35.79%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007255	Metagenome / Metatranscriptome	354	Y
F014361	Metagenome / Metatranscriptome	263	Y
F015835	Metagenome / Metatranscriptome	251	Y
F016120	Metagenome / Metatranscriptome	249	Y
F029976	Metagenome / Metatranscriptome	186	Y
F079583	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000037014	F014361	N/A	MSLLSAFNTQLVNLFDELCSTFPEDKEIKMATEAIKGAKKINPRLILDLFVEHVYKECSTAVYERNAVLFRQIAQRKISNQFNEMISALSIFDKYWDTMGQKNQDVIWQYLKVLCILCEKATAQ
Ga0214921_1000037029	F007255	GGA	MKPFPNADKRGVFLSNEQQMMPVWFPWMLVGGIVFIVLSFIGAKYKDKEYRNIQFLQDFISGSILIAFTGVLVPDVFPALSLPSGLPDFPSMSTDDVDLQVGPPRLAGR
Ga0214921_1000037041	F079583	AGGAGG	MVETIGNWRETQERRRSKIKSAVSTKMTSIGAEFMYHLVVNNIAPIMASSVAGIYTGYFSGRNAPTPTLVRSDIDDERELDLLQMDRMLKWMSLIFEEKFHPVEDTTPLEEEKEETHKAYKKELYSIYVTICSDFKQYQNWKKYNSNIWVFSSYRNKNTKALARKILGDIKLFHEGLKMFSMFEKL
Ga0214921_1000037047	F029976	N/A	METCKEIQGNDLGYSKNAKDWAIRRRVSKAAMIGYETVSETAKASVFNEGLINLRMLKVQSSLLGNMEGNTTWGGLAYSN
Ga0214921_1000037081	F016120	N/A	MSKQLPPVQRQSMEEATAEAEARPLDYQPKERAKFIRTMLQDIAKWMAKGDSEQSIRDRVPEFIEQYPELFKKIINKQDLSPIQTMLSMLDRIGQGNLSQHQASVIVGKKLVDQFVSPQLNGASGGTSGR
Ga0214921_1000037089	F015835	GGA	MADPGIATYVRYWLHYGNMASSFFKQFGAVRKIRDDYEKQIIALLQQNGMEKATIQINNGRINVADKREPNQLSLSKVEELLHGYFMQRGGKDETMEIMTFIRSNRGYSTYKVLKQSGMTPPQGGTQGAQPQGGINKLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10000370

Overview

Ecosystem & Geography

Associated Families

Sequences